YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24650804, gi\|...
Organism:	Drosophila melanogaster
Length:	281 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24650804, gi|....

Description	E-value	Query Range	Subject Range
gi\|32407812, gi\|... - gi\|32407812\|ref\|XP_324404.1\| predicted protein [Neurospora crassa], gi\|28917485\|gb\|EAA27185.1\| predi... gi\|85079797 - gi\|85079797\|ref\|XP_956421.1\| hypothetical protein NCU05047 [Neurospora crassa OR74A]	339.0	[0..30]	[274..1459]
gi\|125773969, gi... - gi\|54637979\|gb\|EAL27381.1\| GA12736-PA [Drosophila pseudoobscura], gi\|125773969\|ref\|XP_001358243.1\| G...	154.0	[0..1]	[272..1]
gi\|58264104, gi\|... - gi\|58264104\|ref\|XP_569208.1\| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21], g...	51.0	[0..131]	[266..598]
gi\|50260085, gi\|... - gi\|50260085\|gb\|EAL22748.1\| hypothetical protein CNBB1960 [Cryptococcus neoformans var. neoformans B-...	51.0	[0..131]	[266..598]
gi\|73967669 - gi\|73967669\|ref\|XP_859301.1\| PREDICTED: similar to Bile-salt-activated lipase precursor (BAL) (Bile-...	50.0	[0..143]	[275..581]
IF2_DESAG - Translation initiation factor IF-2 OS=Desulfovibrio alaskensis (strain G20) GN=infB PE=3 SV=1	48.0	[0..140]	[273..281]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKEETPST GGAAPVATVA ASGSATTSYA NVVQNLETKK SGTSNTTTTT ARATVDNKEN  60
   61 QPNLKSFKSW SEEAAAAEAA GESPIVGSVS LAQTGEKRAA ASGGDNTAEN SSELDDNNDF 120
  121 VPVLSHHRRD RKKARKEK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [139-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRDQQPAGGR GDGQKPQQAG GRRVPGSSDT ERKSVRPRAP RGGSPRKSAA GAAGAAGSNA  60
   61 GAVSSAVPGG PKVHKDRKDT SPSASIEGAG SSGNEAKSAD GDQQAGEKGA AGAAPPPKRF 120
  121 IAAPPPKVNA WKVSDQMIES LSD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits