YRC Public Data Repository - Protein Structure Prediction

Protein:	CG17856-PA
Organism:	Drosophila melanogaster
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17856-PA.

Description	E-value	Query Range	Subject Range
gi\|68051539 - gi\|68051539\|gb\|AAY85033.1\| IP05674p [Drosophila melanogaster]	168.0	[0..1]	[111..2]
gi\|116116925, gi... - gi\|118792492\|ref\|XP_320347.3\| ENSANGP00000014100 [Anopheles gambiae str. PEST], gi\|116116925\|gb\|EAA0...	157.0	[0..4]	[109..9]
gi\|50731732 - gi\|50731732\|ref\|XP_418347.1\| PREDICTED: similar to Ubiquinol-cytochrome C reductase complex 14 kDa p...	154.0	[0..16]	[109..138]
gi\|73999619 - gi\|73999619\|ref\|XP_535132.2\| PREDICTED: similar to ubiquinol-cytochrome c reductase binding protein ...	153.0	[0..16]	[109..50]
gi\|56684615, gi\|... - gi\|56684615\|gb\|AAW21994.1\| ubiquinol-cytochrome C reductase binding protein [Aedes aegypti], gi\|1571...	151.0	[0..4]	[108..3]
gi\|125982545, gi... - gi\|54643425\|gb\|EAL32169.1\| GA17519 [Drosophila pseudoobscura pseudoobscura], gi\|125982545\|ref\|XP_001... gi\|125982545\|ref... - GA17519-PA [Drosophila pseudoobscura], GA17519 [Drosophila pseudoobscura pseudoobscura]	151.0	[0..1]	[111..1]
gi\|187469727, gi... - gi\|34866011\|ref\|XP_343226.1\| PREDICTED: similar to ubiquinol-cytochrome c reductase binding protein ...	148.0	[0..16]	[109..17]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKYVARVGP AVFSKLGKWA YNMSGFNQYG LYRDDCLYEN EDVAEAVRRL PRKLYDERNY  60
   61 RILRALHLSM TKTILPKEQW TKYEEDIKYL EPYLNEVQKE REEREEWSKT H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.154902
Match:	1bccF
Description:	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	11.5736971809848	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	11.5736971809848	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	8.17739656377432	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.63908133042525	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	5.48702641896397	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	4.88973324048899	bayes_pls_golite062009
oxidoreductase activity	4.83598965448391	bayes_pls_golite062009
cation transmembrane transporter activity	4.64530477348772	bayes_pls_golite062009
ion transmembrane transporter activity	4.44988249046834	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.04580005556932	bayes_pls_golite062009
substrate-specific transporter activity	3.85284374888084	bayes_pls_golite062009
binding	1.31477719915608	bayes_pls_golite062009
protein binding	0.488677333727472	bayes_pls_golite062009
catalytic activity	0.385153095337306	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: