YRC Public Data Repository - Protein Structure Prediction

Protein:	CG4980-PA
Organism:	Drosophila melanogaster
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4980-PA.

Description	E-value	Query Range	Subject Range
gi\|7489339, gi\|2... - pir\|\|T14276 myosin-like protein my2 - common sunflower (fragment), gi\|2444176\|gb\|AAB71527.1\| unconve...	193.0	[0..20]	[275..872]
gi\|56201391 - gi\|56201391\|dbj\|BAD72949.1\| myosin XI [Nicotiana tabacum]	191.0	[0..20]	[271..871]
gi\|11276958, gi\|... - gi\|4733891\|gb\|AAD17931.2\| unconventional myosin heavy chain [Zea mays], gi\|162463474\|ref\|NP_00110492...	190.0	[0..21]	[271..872]
gi\|113549403, gi... - gi\|115454663\|ref\|NP_001050932.1\| Os03g0686300 [Oryza sativa (japonica cultivar-group)], gi\|113549403...	189.0	[0..21]	[271..723]
gi\|50760411 - gi\|50760411\|ref\|XP_418010.1\| PREDICTED: similar to AMP deaminase 1 (Myoadenylate deaminase) (AMP dea...	188.0	[0..1]	[206..1818]
gi\|42567989 - gi\|42567989\|ref\|NP_197549.3\| XIK; motor/ protein binding [Arabidopsis thaliana]	183.0	[0..20]	[271..886]
gi\|13384201 - gi\|13384201\|gb\|AAK21311.1\| myosin subfamily XI heavy chain [Petroselinum crispum]	179.0	[0..20]	[276..871]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGEVIVDAL PYIDHGYDDV GVRESALAMV EEECRRYRPT KNYLDHLPLP ASSPFETPLM  60
   61 ANEFERIQNR LPMETLSMKR YELPPPPSGK LSEVSAWQEA IENSMAQLEH QWVRSLNLEL 120
  121 MLDYGTEAWK SYLEVFTAMQ AKAQLQLQQL KKDIQDVNWQ RKQAQTQAGE RLRSLEAHWV 180
  181 LLVSKNYEIE TECVELEKIV HAARQQLRKI TPPPSANDTA PTPEYTNGFD QNDLAESNGS 240
  241 SSSNPDPSQP GDDGTDADGD SKEEDKSEAQ EESSNGST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits