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View Structure Prediction Details

Protein: side-PA
Organism: Drosophila melanogaster
Length: 939 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for side-PA.

Description E-value Query
Range
Subject
Range
CNTN4 - contactin 4
449.0 [0..5] [931..41]

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Predicted Domain #1
Region A:
Residues: [1-615]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLLLPTSGM PTNTLETETP AMQTTYWPRQ TGNSKSKSNT NCKCNINTHR KSRTRCPDNG  60
   61 KTIWAVGFTL VLLTCLQQLK SVSADEESQD FQKNIPARLV WAALGKTVEL PCDLTPPTSQ 120
  121 DSVKLLLWFK DTTGIPLYSL DSRGGNVKLA PHAAIASDLG QRLFFSIGDN PKDSRLQIND 180
  181 VKPEDGGVYR CRVDFFNSPT RNFRHNLTLV VPPEEPRIFD AQGKEISQMA GPFREGYELF 240
  241 LCCQVRGGRP PPKVTWWRDD TELIGTSHTS VEEGATVMVN QLLIGTTTRD FYGIRIECRA 300
  301 QGTRLVDPVR KDVTVQVYLK PVRVKIATPN ELLTAGQPMP IRCESWGSYP AAKITWLLDG 360
  361 EPIRNAEVTV HSDKEDGNIT TSILTLKVTS ENDNAELTCR ATNPWFSGGA IEDKRIIRVA 420
  421 YPPTVSVHLA NEDPSRLVTR AEGQNVTFKC RADARPPVTS YSWFKNGMRM SGESTEIMHL 480
  481 TQLERESAGA YACGATNTEG ETRSSSLTLK VQFSPRCKSG TEQTSIGAVS LHSILVKCEV 540
  541 DADPPDSVRF SWTYNNTRNV SPVLNSRIQS NGLASTVTYL PQTDSELITL ACWASNAVGR 600
  601 QTTPCLVHIL PANTP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.221849
Match: 1e07A
Description: Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [616-939]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAPKACELRN DTVLEVVCVA GSDGGLSQYF MLEVVGGDPL YSGDPGGSAG QGRGQFSEAI  60
   61 GLGDNEISTL NDQATSAPIF RMQENSPQFR LNNLEPGREY QFLVYAVNAK GRSEPPVVIE 120
  121 NVRVAAQLGP YDESILSEDP TPAETTHHGG GGVGGSGSSS GLGTGASTGS GPEKQSTLLI 180
  181 LAAVVVIGAV VVTSIIVAGI VVVCRHRPRP PEPQEVRKSM RPARNDVPSM YIEEDELNEL 240
  241 EEGGGRAADI RARVAPPNSH LCGGGGMPMP GGVGSSGGAI VGVAGPHHYI SESFIQYAQP 300
  301 SLNDPDLILP RGELEFTTLD PTLK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 2v5yA
Description: No description for 2v5yA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle