YRC Public Data Repository - Protein Structure Prediction

Protein:	CG3348-PA
Organism:	Drosophila melanogaster
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG3348-PA.

Description	E-value	Query Range	Subject Range
gi\|54638044, gi\|... - gi\|54638044\|gb\|EAL27446.1\| GA17395-PA [Drosophila pseudoobscura], gi\|125774099\|ref\|XP_001358308.1\| G...	138.0	[0..3]	[97..1]
CG14645-PA - This gene is referred to in FlyBase by the symbol Dmel\CG14645 (CG14645, FBgn0040687). It is a prote...	121.0	[0..16]	[89..21]
gi\|33328977 - gi\|33328977\|gb\|AAQ09895.1\| CG14645 [Drosophila yakuba]	116.0	[0..16]	[89..19]
gi\|24266646 - gi\|24266646\|gb\|AAN52276.1\|AF468865_1 Pro1 [Glossina morsitans morsitans]	112.0	[0..20]	[89..23]
gi\|116132489, gi... - gi\|118778655\|ref\|XP_308779.3\| AGAP006991-PA [Anopheles gambiae str. PEST], gi\|116132489\|gb\|EAA04414.... AGAP006991-PA - \|protein_coding\|2L:40497066:40497432:-1\|gene:AGAP006991	111.0	[0..17]	[88..27]
gi\|157110996, gi... - gi\|157110996\|ref\|XP_001651347.1\| hypothetical protein AaeL_AAEL005702 [Aedes aegypti], gi\|108878594\|...	109.0	[0..17]	[87..21]
gi\|12657851 - gi\|12657851\|gb\|AAK01057.1\|AF327453_1 peritrophin-15 precursor [Chrysomya bezziana]	107.0	[0..17]	[83..23]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTASAHLPI QKRRPHEHNG EPSCQGLDEV NRMFRNYWDP TAYWVCDKQG TRARLQRCPQ  60
   61 SQLYSEELGR CVHYADWAWT DPKEPAGRAK ISQSVSTN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.954
Match:	1dqcA
Description:	Tachycitin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits