YRC Public Data Repository - Protein Structure Prediction

Protein:	Pdf-PA
Organism:	Drosophila melanogaster
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Pdf-PA.

Description	E-value	Query Range	Subject Range
gi\|21426920 - gi\|21426920\|gb\|AAL49303.2\| RH08487p [Drosophila melanogaster]	162.0	[0..1]	[102..27]
gi\|58387762, gi\|... - gi\|58387762\|ref\|XP_315791.2\| ENSANGP00000013847 [Anopheles gambiae str. PEST], gi\|55238579\|gb\|EAA108...	125.0	[0..1]	[102..46]
gi\|46090769 - gi\|46090769\|dbj\|BAD13522.1\| pigment-dispersing factor [Musca domestica]	110.0	[0..4]	[102..6]
gi\|125775029\|ref... - GA19638-PA [Drosophila pseudoobscura], GA19638 [Drosophila pseudoobscura pseudoobscura] gi\|194102453, gi... - gi\|195145052\|ref\|XP_002013510.1\| GL24178 [Drosophila persimilis], gi\|194102453\|gb\|EDW24496.1\| GL2417... gi\|54638507, gi\|... - gi\|54638507\|gb\|EAL27909.1\| GA19638 [Drosophila pseudoobscura pseudoobscura], gi\|125775029\|ref\|XP_001...	100.0	[0..1]	[101..1]
PDH2_LITVA - Pigment-dispersing hormone type 2 OS=Litopenaeus vannamei GN=PDH2 PE=2 SV=2	100.0	[0..1]	[102..1]
gi\|2133546 - gi\|2133546\|pir\|\|JC4756 pigment dispersing hormone related peptide precursor 79 - penaeid shrimp (Pen...	99.0	[0..1]	[102..1]
gi\|46090753 - gi\|46090753\|dbj\|BAD13514.1\| pigment dispersing factor [Meimuna opalifera]	98.0	[0..1]	[102..1]
gi\|48147219 - gi\|48147219\|dbj\|BAD22538.1\| pigment-dispersing factor [Phormia regina]	97.0	[0..7]	[102..8]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARYTYLVAL VLLAICCQWG YCGAMAMPDE ERYVRKEYNR DLLDWFNNVG VGQFSPGQVA  60
   61 TLCRYPLILE NSLGPSVPIR KRNSELINSL LSLPKNMNDA GK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.564	d.58.38	Urease metallochaperone UreE, C-terminal domain
View	Download	0.558	a.60.11	Hypothetical protein YjbJ
View	Download	0.532	a.60.3	C-terminal domain of RNA polymerase alpha subunit
View	Download	0.488	a.44.1	Disulphide-bond formation facilitator (DSBA), insertion domain
View	Download	0.446	a.3.1	Cytochrome c

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits