YRC Public Data Repository - Protein Structure Prediction

Protein:	m2-PA
Organism:	Drosophila melanogaster
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for m2-PA.

Description	E-value	Query Range	Subject Range
gi\|55715416 - gi\|55715416\|gb\|AAV59210.1\| enhancer of split m2 protein [Drosophila melanogaster]	389.0	[0..1]	[218..1]
gi\|55715455 - gi\|55715455\|gb\|AAV59246.1\| enhancer of split m2 protein [Drosophila simulans]	376.0	[0..1]	[218..1]
gi\|55715041 - gi\|55715041\|gb\|AAV59029.1\| enhancer of split m2 protein [Drosophila yakuba]	363.0	[0..1]	[218..1]
gi\|125776141, gi... - gi\|54638922\|gb\|EAL28324.1\| GA19354-PA [Drosophila pseudoobscura], gi\|125776141\|ref\|XP_001359180.1\| G...	294.0	[0..25]	[218..1]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLDTKNLTA SSTSALTAAT ASNSKSTRRM RNVWKPLSRL LKVGGKGRTA QATLAHPNNV  60
   61 DLNNTQQQQQ QQQQELLIED DTKSTPEESI HKYGLELRQL PEEEQVSLTQ PPNTPTLISS 120
  121 VHVDKVSAQS CGNCQHGRNC QHRHHSSSNI NSSSSSSNMN SSSATQLPSN LWDLQLPLQY 180
  181 ISTDNGTFFW ANTQDRVDDD LLHALLCQSF SQLPGTLC

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits