YRC Public Data Repository - Protein Structure Prediction

Protein:	malpha-PA
Organism:	Drosophila melanogaster
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for malpha-PA.

Description	E-value	Query Range	Subject Range
m4-PA - The gene E(spl) region transcript m4 is referred to in FlyBase by the symbol Dmel\m4 (CG6099, FBgn00... gi\|195349615, gi... - gi\|195349615\|ref\|XP_002041338.1\| GM10204 [Drosophila sechellia], gi\|194123033\|gb\|EDW45076.1\| GM10204... gi\|55715466 - gi\|55715466\|gb\|AAV59256.1\| enhancer of split m4 protein [Drosophila simulans]	176.0	[0..1]	[138..1]
gi\|55715456 - gi\|55715456\|gb\|AAV59247.1\| enhancer of split m4 protein [Drosophila simulans]	175.0	[0..1]	[138..1]
gi\|194908133, gi... - gi\|194908133\|ref\|XP_001981712.1\| GG12205 [Drosophila erecta], gi\|190656350\|gb\|EDV53582.1\| GG12205 [D... gi\|55714967 - gi\|55714967\|gb\|AAV59026.1\| enhancer of split m4 protein [Drosophila yakuba]	175.0	[0..1]	[138..1]
gi\|125776137\|ref... - GA19352-PA [Drosophila pseudoobscura], GA19352 [Drosophila pseudoobscura pseudoobscura] gi\|195151949, gi... - gi\|195151949\|ref\|XP_002016901.1\| GL22019 [Drosophila persimilis], gi\|194111958\|gb\|EDW34001.1\| GL2201... gi\|125776137, gi... - gi\|54638921\|gb\|EAL28323.1\| GA19352 [Drosophila pseudoobscura pseudoobscura], gi\|125776137\|ref\|XP_001...	157.0	[0..1]	[138..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCQQVVVVAN TNNKMKTSYS IKQVLKTLFK KQQKQQQKPQ GSLESLESVD NLRNAQVEEA  60
   61 YYAEIDENAA NEKLAQLAHS QEFEIVEEQE DEEDVYVPVR FARTTAGTFF WTTNLQPVAS 120
  121 VEPAMCYSMQ FQDRWAQA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.735	a.25.1	Ferritin-like
View	Download	0.636	a.25.1	Ferritin-like
View	Download	0.587	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.568	a.7.4	Smac/diablo
View	Download	0.568	a.7.4	Smac/diablo
View	Download	0.559	a.26.1	4-helical cytokines
View	Download	0.559	a.26.1	4-helical cytokines
View	Download	0.522	a.7.7	BAG domain
View	Download	0.461	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.440	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits