YRC Public Data Repository - Protein Structure Prediction

Protein:	Dms-PA, FBpp0312...
Organism:	Drosophila melanogaster
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dms-PA, FBpp0312....

Description	E-value	Query Range	Subject Range
gi\|1765940 - gi\|1765940\|gb\|AAB39926.1\| leucomyosuppressin precursor	144.0	[0..1]	[100..1]
gi\|46019615 - gi\|46019615\|emb\|CAF04070.1\| leucomyosuppressin precursor [Blattella germanica]	143.0	[0..1]	[100..1]
gi\|54638879\|gb\|E... - GA19595-PA [Drosophila pseudoobscura], GA19595 [Drosophila pseudoobscura pseudoobscura] gi\|195151841, gi... - gi\|195151841\|ref\|XP_002016847.1\| GL21855 [Drosophila persimilis], gi\|194111904\|gb\|EDW33947.1\| GL2185... gi\|54638879, gi\|... - gi\|54638879\|gb\|EAL28281.1\| GA19595 [Drosophila pseudoobscura pseudoobscura], gi\|125776009\|ref\|XP_001...	143.0	[0..1]	[100..1]
gi\|118794655, gi... - gi\|118794655\|ref\|XP_321650.3\| myosuppressin (AGAP001474-PA) [Anopheles gambiae str. PEST], gi\|116116...	136.0	[0..4]	[100..6]
gi\|15825168 - gi\|15825168\|gb\|AAL09583.1\|AF390443_1 manducaFLRFamide I precursor [Pseudaletia unipuncta]	124.0	[0..11]	[100..10]
NEMS_APIME - Myosuppressin OS=Apis mellifera PE=1 SV=1	106.0	[0..16]	[100..1]
gi\|108876797, gi... - gi\|157115666\|ref\|XP_001652650.1\| hypothetical protein AaeL_AAEL007294 [Aedes aegypti], gi\|108876797\|...	103.0	[0..7]	[100..9]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFAQFFVAC CLAIVLLAVS NTRAAVQGPP LCQSGIVEEM PPHIRKVCQA LENSDQLTSA  60
   61 LKSYINNEAS ALVANSDDLL KNYNKRTDVD HVFLRFGKRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.690	a.77.1	DEATH domain
View	Download	0.663	a.77.1	DEATH domain
View	Download	0.510	a.28.3	Retrovirus capsid protein C-terminal domain
View	Download	0.491	a.77.1	DEATH domain
View	Download	0.491	a.28.3	Retrovirus capsid protein C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits