YRC Public Data Repository - Protein Structure Prediction

Protein:	CG10219-PA
Organism:	Drosophila melanogaster
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG10219-PA.

Description	E-value	Query Range	Subject Range
gi\|38048543 - gi\|38048543\|gb\|AAR10174.1\| similar to Drosophila melanogaster CG10219 [Drosophila yakuba]	216.0	[0..1]	[179..1]
gi\|54638374, gi\|... - gi\|54638374\|gb\|EAL27776.1\| GA10165-PA [Drosophila pseudoobscura], gi\|125774767\|ref\|XP_001358635.1\| G...	201.0	[0..1]	[181..1]
gi\|46107720, gi\|... - gi\|46107720\|ref\|XP_380919.1\| hypothetical protein FG00743.1 [Gibberella zeae PH-1], gi\|42547846\|gb\|E...	186.0	[0..4]	[173..17]
DHSD_ASHGO - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Ashbya gossypii GN... DHSD_ASHGO - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Ashbya gossypii (s...	180.0	[0..4]	[182..8]
DHSD_MOUSE - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Mus musculus GN=Sd... gi\|37182695 - gi\|37182695\|gb\|AAQ89148.1\| AVLL5809 [Homo sapiens]	179.0	[0..3]	[174..1]
DHSD_RAT - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Rattus norvegicus ...	176.0	[0..3]	[174..1]
gi\|68468182, gi\|... - gi\|68468182\|ref\|XP_721930.1\| hypothetical protein CaO19.4022 [Candida albicans SC5314], gi\|68467865\|... orf19.4022, orf1... - SDH4 CGDID:CAL0004721 Assembly 19, Contig19-10194 (233377, 232883) CDS, reverse complemented, transl... gi\|238882901 - gi\|238882901\|gb\|EEQ46539.1\| hypothetical protein CAWG_04894 [Candida albicans WO-1]	175.0	[0..17]	[173..10]
DHSD_YEAST - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Saccharomyces cere... SDH4 - Membrane anchor subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p), which couples the o... gi\|151942160 - gi\|151942160\|gb\|EDN60516.1\| succinate dehydrogenase membrane anchor subunit [Saccharomyces cerevisia... gi\|190404867 - gi\|190404867\|gb\|EDV08134.1\| succinate dehydrogenase membrane anchor subunit [Saccharomyces cerevisia...	173.0	[0..15]	[178..14]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSLLLRGA VRCNAANLVK SARITPLKSY STLVANVQRK AVVQPLAVAK IVAPVVREIS  60
   61 VSAPRMASAG SSHTLLWTVE RIVSAGLLAV IPAAFIAPSQ VLDALMAISV VIHTHWGVEA 120
  121 MVVDYMRPSV VGNVLPKVAH IALIIISVAT LGGLFYFIQN DVGLANGIKR FWAIKGKDAE 180
  181 KA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1zoyD
Description:	Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits