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View Structure Prediction Details

Protein: Tbp-1-PA
Organism: Drosophila melanogaster
Length: 428 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Tbp-1-PA.

Description E-value Query
Range
Subject
Range
gi|119524342, gi... - gi|119719222|ref|YP_919717.1| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk 5]...
359.0 [0..5] [427..282]

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Predicted Domain #1
Region A:
Residues: [1-428]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQTLEDKSI WEDGEESLGE EVMRMSTDEI VSRTRLMDNE IKIMKSEVIR ITHEIQAQNE  60
   61 KIKDNTEKIK VNKTLPYLVS NVIELLDVDP QEEEDDGSVT VLDNQRKGKC AVIKTSTRQA 120
  121 YFLPVIGLVD AEKLKPGDLV GVNKDSYLIL ETLPAEYDAR VKAMEVDERP TEQYSDIGGL 180
  181 DKQIQELIEA VVLPMTHKEK FKNLGIHPPK GVLLYGPPGT GKTLLARACA AQTKSTFLKL 240
  241 AGPQLVQMFI GDGAKLVRDA FALAKEKAPA IIFIDELDAI GTKRFDSEKA GDREVQRTML 300
  301 ELLNQLDGFS STADIKVIAA TNRVDILDPA LLRSGRLDRK IEFPHPNEEA RARIMQIHSR 360
  361 KMNVSNDVNF EELSRSTDDF NGAQCKAVCV EAGMIALRRS ANSVTHEDFM DAIMEVQAKK 420
  421 KANLNYYA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 89.522879
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle