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View Structure Prediction Details

Protein: Irk2-PA
Organism: Drosophila melanogaster
Length: 453 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Irk2-PA.

Description E-value Query
Range
Subject
Range
gi|125773099|ref... - GA18138-PA [Drosophila pseudoobscura], GA18138 [Drosophila pseudoobscura pseudoobscura]
gi|125773099, gi... - gi|54637541|gb|EAL26943.1| GA18138 [Drosophila pseudoobscura pseudoobscura], gi|125773099|ref|XP_001...
507.0 [0..1] [453..1]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFNFSTHSA APTSTTIPTT TQANGGEQAT QPLKKAIEAD PDSLDSVISN PQSYPITIVP  60
   61 NRPTSYYGLS QNGKPFPRQP SCRSRNFRP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [90-453]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSMRRVRRRA VFKNGDCNVV QKHLQRRRVR FLQDMYTTMV DWQWRWTLLA FALSFILSWL  60
   61 FFALIWWLII YTHGDLEEPH LPENQEESGW APCVSAIDGF TSCFLFSIET QHTIGYGVRT 120
  121 TSPECPEAIF MMCFQSIYGV MSSAFMAGIV FAKMTRAKQR AQTLLFSKHA VICQRDGTLS 180
  181 LMFRVGDMRK SHIIGAGVRA QLIRTKSTKE GEVMTQYFTE LEIGTDDSGS DLFFIWPMVI 240
  241 EHKIDENSPL YNLNATDMLQ DKFEIVVILE GTVESTGQST QARSSYINTE ILWGHRFDPV 300
  301 VLYNKDLQAY EIDYARFNET TQVDTPLCSA RELNEIYKIQ EGFRTPETTF TMRQLSHNHS 360
  361 DQAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 93.221849
Match: 2qksA
Description: No description for 2qksA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle