YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0310735, FBp...
Organism:	Drosophila melanogaster
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0310735, FBp....

Description	E-value	Query Range	Subject Range
CLD1_MOUSE - Claudin-1 OS=Mus musculus GN=Cldn1 PE=1 SV=1	176.0	[0..12]	[203..2]
CLD1_RAT - Claudin-1 OS=Rattus norvegicus GN=Cldn1 PE=1 SV=2	176.0	[0..12]	[203..2]
gi\|49333437 - gi\|49333437\|gb\|AAT64057.1\| claudin 3c [Takifugu rubripes]	176.0	[0..13]	[203..2]
gi\|61889131, gi\|... - gi\|61889131\|ref\|NP_001013629.1\| claudin 1 [Gallus gallus], gi\|58414959\|gb\|AAW73082.1\| claudin-1 [Gal...	169.0	[0..12]	[203..2]
gi\|54020932, gi\|... - gi\|54020932\|ref\|NP_001005709.1\| claudin 3 [Xenopus (Silurana) tropicalis], gi\|49523224\|gb\|AAH75291.1...	169.0	[0..13]	[200..2]
gi\|73976701 - gi\|73976701\|ref\|XP_848612.1\| PREDICTED: similar to claudin 19 (predicted) [Canis familiaris]	169.0	[0..12]	[196..93]
gi\|50924892, gi\|... - gi\|50924892\|gb\|AAH79722.1\| MGC82990 protein [Xenopus laevis], gi\|148227415\|ref\|NP_001087400.1\| MGC82...	168.0	[0..13]	[200..2]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTTTIETI TITRPLKVIA FICGVIVVAL MIMALASTDW LMASDWRQGL FVHCIEDDSV  60
   61 PPLPFNIQDP PGCYWTRDVG YIKATAALCI ITLITDVIAT VLTGLGLRTQ NHNLKYKFYR 120
  121 IAVLVMLVSL LAVLSALIVY PVCFAGELTM ANRRVWEFGW AYGVGWGAAI FLFGAVVLLL 180
  181 CDKESEEIYY KERKIVHENQ MRA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.055517
Match:	PF00822.11
Description:	No description for PF00822.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits