YRC Public Data Repository - Protein Structure Prediction

Protein:	CG17819-PA
Organism:	Drosophila melanogaster
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17819-PA.

Description	E-value	Query Range	Subject Range
gi\|303734, gi\|738942 - gi\|738942\|prf\|\|2001457K GTP-binding protein, gi\|303734\|dbj\|BAA02118.1\| GTP-binding protein [Pisum sa... gi\|1098293, gi\|4... - pir\|\|S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean, gi\|452359\|emb\|CAA82707.1\| g...	192.0	[0..13]	[185..1]
RIC1_ORYSJ - Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2 gi\|125526416 - gi\|125526416\|gb\|EAY74530.1\| hypothetical protein OsI_02420 [Oryza sativa Indica Group] RIC1_ORYSA - Ras-related protein RIC1 - Oryza sativa (Rice)	191.0	[0..13]	[185..1]
RIC1_ORYSA - (P40392) Ras-related protein RIC1	191.0	[0..13]	[185..1]
ARA5_ARATH - Ras-related protein ARA-5 - Arabidopsis thaliana (Mouse-ear cress)	190.0	[0..8]	[185..51]
gi\|1370166 - gi\|1370166\|emb\|CAA98160.1\| RAB1C [Lotus japonicus]	190.0	[0..13]	[185..1]
gi\|421942, gi\|311907 - pir\|\|S34253 GTP-binding protein, ras-related - common tobacco, gi\|311907\|emb\|CAA51011.1\| ras-related...	190.0	[0..13]	[185..1]
gi\|4586580 - gi\|4586580\|dbj\|BAA76422.1\| rab-type small GTP-binding protein [Cicer arietinum]	190.0	[0..13]	[185..1]
gi\|37360618 - gi\|37360618\|dbj\|BAC98287.1\| mKIAA3012 protein [Mus musculus]	190.0	[0..10]	[185..49]
gi\|89257579 - gi\|89257579\|gb\|ABD65068.1\| GTP-binding protein, putative [Brassica oleracea]	189.0	[0..13]	[185..1]
gi\|1616614 - gi\|1616614\|emb\|CAA69701.1\| small GTP-binding protein [Nicotiana plumbaginifolia]	189.0	[0..13]	[185..1]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFYGPVSFI KKILPAGSQK SCLLILGLDN AGKSTLTDRL AEIFNGESKE SNNQVSEWSF  60
   61 TINNFRVQLW DINGELKNRQ IWPKYYKKVN VLIFVLDSTD ALRLSEARCV LCDVLMHQEL 120
  121 DNAPLLIVSN KKDASGSLSM STVIDLMGLY RLTGRDWTFE ECSMRTGSGV QEIVNWINEK 180
  181 INNNRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	1mr3F
Description:	ADP-ribosylation factor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits