| Protein: | GABA-B-R2-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1220 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GABA-B-R2-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
691.0 | [0..1] | [1220..1] |
|
Region A: Residues: [1-472] |
1 11 21 31 41 51
| | | | | |
1 MFRPSWFPFA SLLFLLLWST ACGRTAKRSD VYIAGFFPYG DGVENSYTGR GVMPSVKLAL 60
61 GHVNEHGKIL ANYRLHMWWN DTQCNAAVGV KSFFDMMHSG PNKVMLFGAA CTHVTDPIAK 120
121 ASKHWHLTQL SYADTHPMFT KDAFPNFFRV VPSENAFNAP RLALLKEFNW TRVGTVYQNE 180
181 PRYSLPHNHM VADLDAMEVE VVETQSFVND VAESLKKLRE KDVRIILGNF NEHFARKAFC 240
241 EAYKLDMYGR AYQWLIMATY STDWWNVTQD SECSVEEIAT ALEGAILVDL LPLSTSGDIT 300
301 VAGITADEYL VEYDRLRGTE YSRFHGYTYD GIWAAALAIQ YVAEKREDLL THFDYRVKDW 360
361 ESVFLEALRN TSFEGVTGPV RFYNNERKAN ILINQFQLGQ MEKIGEYHSQ KSHLDLSLGK 420
421 PVKWVGKTPP KDRTLIYIEH SQVNPTIYIV SASASVIGVI IATVFLAFNI KY
|
| Detection Method: |  |
| Confidence: | 71.0 |
| Match: | 2e4uA |
| Description: | No description for 2e4uA was found. |
|
Region A: Residues: [473-720] |
1 11 21 31 41 51
| | | | | |
1 RNQRYIKMSS PHLNNLIIVG CMMTYLSIIF LGLDTTLSSV AAFPYICTAR AWILMAGFSL 60
61 SFGAMFSKTW RVHSIFTDLK LNKKVIKDYQ LFMVVGVLLA IDIAIITTWQ IADPFYRETK 120
121 QLEPLHHENI DDVLVIPENE YCQSEHMTIF VSIIYAYKGL LLVFGAFLAW ETRHVSIPAL 180
181 NDSKHIGFSV YNVFITCLAG AAISLVLSDR KDLVFVLLSF FIIFCTTATL CLVFVPKLVE 240
241 LKRNPQGV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [721-802] |
1 11 21 31 41 51
| | | | | |
1 VDKRVRATLR PMSKNGRRDS SVCELEQRLR DVKNTNCRFR KALMEKENEL QALIRKLGPE 60
61 ARKWIDGVTC TGGSNVGSEL EP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [803-1220] |
1 11 21 31 41 51
| | | | | |
1 ILNDDIVRLS APPVRREMPS TTVTEMTSVD SVTSTHVEMD NSFVSVQSTV MAPSLPPKKK 60
61 KQSIVEHHSH APAPTMMQPI QQQLQQHLQQ HQQMQQQHLQ QQQHQQMQQQ QQQQQHHHRH 120
121 LEKRNSVSAQ TDDNIGSITS TAGKRSGGDC SSMRERRQST ASRHYDSGSQ TPTARPKYSS 180
181 SHRNSSTNIS TSQSELSNMC PHSKPSTPAV IKTPTASDHR RTSMGSALKS NFVVSQSDLW 240
241 DTHTLSHAKQ RQSPRNYASP QRCAEHHGGH GMTYDPNTTS PIQRSVSEKN RNKHRPKPQK 300
301 GTVCQSETDS ERERDPPPNS QPCVQPRKVS RSSNIQHAAH HHSSPNVAPD KQRSRQRGKQ 360
361 DSSIYGASSE TELLEGETAI LPIFRKLLTE KSPNYRGRSA VGQSCPNISI KCDIVEYL
|
| Detection Method: | |
| Confidence: | 2.63 |
| Match: | 1h1kI |
| Description: | THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA |
Matching Structure (courtesy of the PDB): |
|
