YRC Public Data Repository - Protein Structure Prediction

Protein:	CG5919-PB, CG5919-PA
Organism:	Drosophila melanogaster
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG5919-PB, CG5919-PA.

Description	E-value	Query Range	Subject Range
gi\|21429130 - gi\|21429130\|gb\|AAM50284.1\| RE22306p [Drosophila melanogaster]	402.0	[0..1]	[256..1]
gi\|35186998 - gi\|35186998\|gb\|AAQ84167.1\| isopentenyl pyrophosphate isomerase [Pueraria montana var. lobata]	362.0	[0..20]	[256..60]
gi\|6856554 - gi\|6856554\|gb\|AAF29975.1\|AF188062_1 isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase...	358.0	[0..7]	[256..20]
gi\|6856550 - gi\|6856550\|gb\|AAF29973.1\|AF188060_1 isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase...	357.0	[0..17]	[256..50]
gi\|13603406 - gi\|13603406\|dbj\|BAB40973.1\| isopentenyl diphosphate isomerase 1 [Nicotiana tabacum]	357.0	[0..33]	[256..59]
gi\|9971806 - gi\|9971806\|gb\|AAG10423.1\| isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase [Tagetes ...	356.0	[0..35]	[256..33]
gi\|78191045 - gi\|78191045\|gb\|ABB29847.1\| isopentenyl pyrophosphate isomerase [Nicotiana langsdorffii x Nicotiana s...	356.0	[0..11]	[256..42]
IDI1_ARATH - Isopentenyl-diphosphate Delta-isomerase I, chloroplastic OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3	354.0	[0..11]	[256..35]

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Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLASRLNLLL PRVSWLRGCS TTAVGQKHQR QVPTEFAVHD PLQAHALKEQ CILVDANDQA  60
   61 IGAASKADCH RVHPETNDVK LHRAFSVFLF NSQGEMLVQK RSSHKITFPN TYTNACCSHP 120
  121 LYEIEQERQE RNAQGIRVAA QRRLNYELGI PTEELQPQDF RYLTRIHYAD TGDGVWGEHE 180
  181 IDYILFLQKD VTLRPNSNEV SEVRYLRRDK IDEAVAKFSA PLTPWFSLIL QHRLKLWWDN 240
  241 LHQLEQFEDL SNIQRF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.69897
Match:	2icjA
Description:	No description for 2icjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits