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View Structure Prediction Details

Protein: FBpp0311976, RpS...
Organism: Drosophila melanogaster
Length: 132 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0311976, RpS....

Description E-value Query
Range
Subject
Range
gi|114577583 - gi|114577583|ref|XP_001147989.1| PREDICTED: similar to RPS27A protein [Pan troglodytes]
168.0 [0..1] [128..80]
gi|73970166 - gi|73970166|ref|XP_531829.2| PREDICTED: similar to ubiquitin and ribosomal protein S27a precursor [C...
166.0 [0..1] [128..73]
gi|73586974 - gi|73586974|gb|AAI02492.1| RPS27A protein [Bos taurus]
163.0 [0..1] [128..26]
gi|29612581 - gi|29612581|gb|AAH49478.1| Zgc:66168 protein [Danio rerio]
162.0 [0..1] [127..17]
gi|600539 - gi|600539|gb|AAA57047.1| ubiquitin [synthetic construct]
161.0 [0..1] [128..1]
gi|49076462, gi|... - gi|71021009|ref|XP_760735.1| hypothetical protein UM04588.1 [Ustilago maydis 521], ref|XP_402203.1| ...
161.0 [0..1] [129..1]

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Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLFVRGLET IEALEVSQDA TIAGVKNQLA QIHGFNAEEF SLDCEGITLA NETPVTALSS  60
   61 FELDLNIPML G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.045757
Match: 2ojrA
Description: No description for 2ojrA was found.

Predicted Domain #2
Region A:
Residues: [72-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKVHGSLARA GKVKGQTPKV EKQEKKKKKT GRAKRRIQYN RRFVNFVQGF GRRRGPNANS  60
   61 T

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 27.229148
Match: PF04758.5
Description: No description for PF04758.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle