YRC Public Data Repository - Protein Structure Prediction

Protein:	Elongin-B-PA
Organism:	Drosophila melanogaster
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Elongin-B-PA.

Description	E-value	Query Range	Subject Range
gi\|68357768, gi\|... - gi\|68357782\|ref\|XP_698479.1\| PREDICTED: similar to transcription elongation factor B (SIII), polypep...	172.0	[0..1]	[118..388]
gi\|114660528 - gi\|114660528\|ref\|XP_001173192.1\| PREDICTED: elongin B [Pan troglodytes]	170.0	[0..1]	[118..1]
gi\|46276893, gi\|... - gi\|46276893\|ref\|NP_996896.1\| elongin B isoform b [Homo sapiens], gi\|119605880\|gb\|EAW85474.1\| transcr...	170.0	[0..1]	[118..1]
ELOB_RAT - Transcription elongation factor B polypeptide 2 OS=Rattus norvegicus GN=Tceb2 PE=1 SV=1 gi\|110293361 - gi\|110293361\|gb\|ABG66310.1\| transcription elongation factor B [Lama pacos] ELOB_MOUSE - Transcription elongation factor B polypeptide 2 OS=Mus musculus GN=Tceb2 PE=1 SV=1	165.0	[0..1]	[118..1]
gi\|74268162, gi\|... - gi\|77736578\|ref\|NP_001029972.1\| elongin B [Bos taurus], gi\|74268162\|gb\|AAI03197.1\| Transcription elo...	164.0	[0..1]	[118..1]
gi\|109484203 - gi\|109484203\|ref\|XP_001072065.1\| PREDICTED: similar to transcription elongation factor B (SIII), pol...	163.0	[0..2]	[118..33]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVFLMIRRQ KTTIFTDAKE NTTVAELKRM IEGILKVQPV DQRLYNQDND VMEDDSTLQD  60
   61 YGVTVSTAKA QAPAQLGLTF RNEVGDFETL DMTPYSAPPD LPEVMKNQEA SNGQEQVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	1lm8B
Description:	Elongin B
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits