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View Structure Prediction Details

Protein: gi|24648377, gi|...
Organism: Drosophila melanogaster
Length: 183 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24648377, gi|....

Description E-value Query
Range
Subject
Range
gi|3511287, gi|7... - pir||T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...
147.0 [0..4] [164..1508]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQPATPSTP VNNAPSATPS AASGPAASAP AVASSTPIRI NSAKQQGAAG GGDTLAHPAT  60
   61 PHSHSMPGTP HQQPQSSSVP 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.954
Match: 1pk8A
Description: Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [81-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGGHLLQLQA PLPSAGGGTG AGAVTPSGLS MGASNQSLGV SVGAASSVSG ISITPPNSAG  60
   61 LRQSTGEWNP LLPAPLSVVV FFSPRFFSSL LLSFNVTHTH FSN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.69897
Match: 1i3qA
Description: RBP1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle