YRC Public Data Repository - Protein Structure Prediction

Protein:	CG5023-PA
Organism:	Drosophila melanogaster
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG5023-PA.

Description	E-value	Query Range	Subject Range
CNN2_MOUSE - Calponin-2 OS=Mus musculus GN=Cnn2 PE=1 SV=1	197.0	[0..1]	[169..23]
CNN2 - calponin 2 CNN2_PONPY - Calponin-2 - Pongo pygmaeus (Orangutan) CNN2_PONAB - Calponin-2 OS=Pongo abelii GN=CNN2 PE=2 SV=3	196.0	[0..1]	[169..23]
gi\|45361359, gi\|... - gi\|49522472\|gb\|AAH75515.1\| Hypothetical protein MGC76140 [Xenopus tropicalis], gi\|45361359\|ref\|NP_98...	196.0	[0..4]	[169..24]
gi\|114630314 - gi\|114630314\|ref\|XP_001156976.1\| PREDICTED: similar to neutral calponin isoform 2 [Pan troglodytes]	195.0	[0..1]	[169..23]
gi\|157118472, gi... - gi\|157118472\|ref\|XP_001659123.1\| calponin/transgelin [Aedes aegypti], gi\|108875705\|gb\|EAT39930.1\| ca...	195.0	[0..1]	[169..1]
gi\|60826805 - gi\|60826805\|gb\|AAX36772.1\| calponin 3 [synthetic construct]	195.0	[0..4]	[169..24]
gi\|119889376, gi... - gi\|76612575\|ref\|XP_869948.1\| PREDICTED: similar to calponin 3 isoform 2 [Bos taurus], gi\|119889376\|r...	194.0	[0..4]	[169..24]
gi\|114557784, gi... - gi\|114557784\|ref\|XP_001156968.1\| PREDICTED: calponin 3 isoform 4 [Pan troglodytes], gi\|114557782\|ref... gi\|109011352, gi... - gi\|109011352\|ref\|XP_001103736.1\| PREDICTED: similar to calponin 3 isoform 3 [Macaca mulatta], gi\|109...	194.0	[0..4]	[169..24]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPRNKEQEQ EVLNWVFAVI GEKVPSGQYE DILKDGIWLC KLANKLAPGS VKKIQERGTN  60
   61 FQLMENIQRF QAAVKKYGVP EEEIFQTADL FERRNIPQVT LSLYALGRIT QKHPEYTGPT 120
  121 LGPKMADKNE RSFTEEQLRA HEGELNLQMG FNKGASQAGH GGMGNTRHM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1wynA
Description:	Solution structure of the CH domain of human calponin-2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits