YRC Public Data Repository - Protein Structure Prediction

Protein:	CG11447-PA
Organism:	Drosophila melanogaster
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG11447-PA.

Description	E-value	Query Range	Subject Range
RLME_MAGSA - Ribosomal RNA large subunit methyltransferase E OS=Magnetospirillum magneticum (strain AMB-1 / ATCC ...	216.0	[0..10]	[246..10]
RLME_RHILO - Ribosomal RNA large subunit methyltransferase E OS=Rhizobium loti (strain MAFF303099) GN=rlmE PE=3 S... RLME_RHILO, RRMJ... - Ribosomal RNA large subunit methyltransferase J OS=Rhizobium loti GN=rrmJ PE=3 SV=1, Ribosomal RNA l...	213.0	[0..18]	[248..10]
gi\|114705167, gi... - gi\|114705167\|ref\|ZP_01438075.1\| cell division protein ftsJ [Fulvimarina pelagi HTCC2506], gi\|1145399...	212.0	[0..15]	[250..1]
gi\|90652009 - gi\|90652009\|gb\|AAI14565.1\| FTSJ2 protein [Homo sapiens]	211.0	[0..7]	[250..2]
gi\|90580530, gi\|... - gi\|90580530\|ref\|ZP_01236335.1\| 23S rRNA methylase [Vibrio angustum S14], gi\|90438188\|gb\|EAS63374.1\| ... gi\|89072568, gi\|... - gi\|89072568\|ref\|ZP_01159140.1\| 23S rRNA methylase [Photobacterium sp. SKA34], gi\|89051672\|gb\|EAR5712...	211.0	[0..30]	[245..2]
gi\|89080519, gi\|... - gi\|89095222\|ref\|ZP_01168145.1\| cell division protein FtsJ [Oceanospirillum sp. MED92], gi\|89080519\|g...	209.0	[0..32]	[246..1]
gi\|107103849 - gi\|107103849\|ref\|ZP_01367767.1\| hypothetical protein PaerPA_01004920 [Pseudomonas aeruginosa PACS2]	208.0	[0..32]	[246..1]
RLME_PSEAB - Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rlm... RLME_PSEAE - Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 ... RLME_PSEAE, RRMJ... - Ribosomal RNA large subunit methyltransferase J OS=Pseudomonas aeruginosa GN=rrmJ PE=3 SV=2, Ribosom... RLME_PSEA8 - Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas aeruginosa (strain LESB58) GN=rlmE PE...	208.0	[0..32]	[246..1]
gi\|194555331, gi... - gi\|84323593\|ref\|ZP_00971662.1\| COG0293: 23S rRNA methylase [Pseudomonas aeruginosa 2192], gi\|2542443... gi\|84317369, gi\|... - gi\|84317369\|ref\|ZP_00965817.1\| COG0293: 23S rRNA methylase [Pseudomonas aeruginosa C3719], gi\|254238...	208.0	[0..32]	[246..1]
RLME_PSEA7 - Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas aeruginosa (strain PA7) GN=rlmE PE=3 ...	207.0	[0..32]	[246..1]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLVFTGNCV FKRLLHTEIG GKYAKQQPRN LKGRSKSSQE WLTRQLADPY VEKARMMNYR  60
   61 CRSAFKLLEI DDKYGILRPG DTVLECGAAP GSWTQVAVER TNANGKQERA PQGAVFSIDL 120
  121 LHFHAVPGAT IFGGMDFTSS LAQKRLREAL QDRKVNCVLS DMAPNATGVR MLDQESITNL 180
  181 CYEVLRFALA MSAPQAHLVV KVWDNGDVPK LERDMLRFYE KVKRVKPRAS RGDSAEHFLV 240
  241 ARNFKGATDS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	2nyuA
Description:	No description for 2nyuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits