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View Structure Prediction Details

Protein: gukh-PA
Organism: Drosophila melanogaster
Length: 1788 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gukh-PA.

Description E-value Query
Range
Subject
Range
gi|39592304, gi|... - gi|39592304|emb|CAE75525.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi|187020927|em...
gi|157762282 - gi|157762282|ref|XP_001673483.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]
679.0 [0..3] [1787..95]

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Predicted Domain #1
Region A:
Residues: [1-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFVQRVVQP VNVAQATAAS LGHASGRFHC TPGKCRNNNC INKQSPDVEV PNGHGSPTSL  60
   61 TRVLVHQAPE DQPVPPAPAP MKKLKHHVEF LSTSPTRHQS QSLPNSRHPS QQRPALGRIA 120
  121 SAPQSPTAGS SKVVSGHEFD SISNITLSNA LRQLASLVLI ASDIFDDLQR DLQAVGERAG 180
  181 RVQRKIAAVE RRVCAYDPKT VTVPESDLLT FAQRKHHFET DKSFQQELFT GETRPLSVRQ 240
  241 LYTEAGKELP VATGATATAL ASLAH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [266-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQSLIPSRSI SFNGEVLSSD HEVLQLNGST DTEDHLLCVS DFGNANRKLR TRIDAEIEIR  60
   61 LPAAIEDLRK WTSSEALGDV TVTPDCMHHV DTSVSTSLAI GENGILTPAL SPSVLSADAV 120
  121 DALYAQNLSQ AADSSRHNHH TQA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [409-666]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIPNDINKDV PLNHRLPSPE EQTKQIALKY PAEVISVNTS GKHFQRMCAA RKSTSGGYAG  60
   61 GATAGSSSST SPENAGQTEG NNLDDNVQTV SRRSRSRKVR GKRRNTIAGI DQKEIQDAAN 120
  121 GNGESKNASN ATSPVAPAQQ AETTSSDAKK SKKFGRSKSS DILKKESAAL PYDKGKSTLT 180
  181 RLNSLKQWGR NRFKFMHRTG ELGDQLDTSG CSSQNSSAEK ADSHHGSPAG DNSKRDIDDE 240
  241 CVVHHLVAQK SESRFSHE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [667-876]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKPSYSSSEK SISVSSSGQL RGRLQLSSGP MAAAHVKMRE TATLNRQRRN GLHALAGKEE  60
   61 QPHSSSGNWS ASSESGRASI GSEITMQPKS SASSTSLNVS SFQPGGAGSG PPSSMLSRRR 120
  121 FLNTSASSSV TSEGTATPEL QAEAGAYPGH LDDETSSAYS CDTEGYYTSF HMDSGLRTLK 180
  181 EEEPSVMPGT PLQTSLHTSS YSFGSQSNQT 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [877-1017]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLNAESEYEL FGRGSTSTTT SSAGTVCTAL MSGAASGPDV PERSSSLGKH SGQSRSQSTS  60
   61 ASSSTLERSY SSSTIGSTLE RTGTIKRNVK MSPTKAGGEV TEKDDQQDQD QQQQLEFSES 120
  121 SDLEGVERIE RIKQKTALTS K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [1018-1194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RIPSMCIITP TTSDDDEHQT NDPNRTLTSL TIDVEHGEQD EDEAEQKTPT NSKDHNLNEL  60
   61 KQTPTKALSG MFEKLRVKLV PGKSSPAKNQ MQPKPANSSA VNDDELYDLA GEYVTIADIS 120
  121 NNNNNNKNIG RRNTGMGIYY SNDIVSKRVE PSTSAVSEYV SLNELPQHLR RHAVSSR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1195-1409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAPAAESESC AQQQLPVEPA AATSQPPPLP LGGRTQGVGD GVPMYAEIGE LSEEKPLASA  60
   61 ANRRLRPNAE GKLVYDSDSL KRRKGAHTTF APGPYVKETE SALHSAESAA AAIASSQDPS 120
  121 AASGAISSTK SAKLLLLTSG GLISGNRKVA NVRPIVAKSP LSRNVSEMAT YQATSYQDQK 180
  181 QLLANRTNPF YETIAAPVAN LMMPSPSGKS NSSTG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1410-1561]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STATSSSSSA SGQSGEEGYQ RFSNIYEQVQ PAPSTQPQED ATATPFQRSA PIYWTLQNRR  60
   61 SQPRPQPAGN VTCRDDLYAT PIRRADRLPR PVAAAAATAA EGNRSNISPI VPRNRSGAFL 120
  121 TSTPTRSGEG ERDSENTQLP PMKQPSRNWT DD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1562-1699]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APERLNTCAD RIGQSKTTLM DFKKLLLAKS AKASPVQRKV SAVELLKKPA QATATPPVVK  60
   61 PSGPGQKVAS AGSKPTINTS LKLLDLSGSP KTFANRRMLR QGQFGSPSKT FAPKMRGPVN 120
  121 MVAAAAAPPR TDIMSTTI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #10
Region A:
Residues: [1700-1788]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEANSEEDHS NTSGGSRASS EAGETVPSSF DLKRNFFLQT EENNFMRGEL KPSFARSNGA  60
   61 AGGGSTEGVN KYVAAPVANP PLPSFETAL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle