YRC Public Data Repository - Protein Structure Prediction

Protein:	CG12269-PA
Organism:	Drosophila melanogaster
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG12269-PA.

Description	E-value	Query Range	Subject Range
gi\|45384406, gi\|... - gi\|45384406\|ref\|NP_990274.1\| hydroxysteroid (17-beta) dehydrogenase 4 [Gallus gallus], gi\|2315981\|gb...	134.0	[0..1]	[106..621]
gi\|27881888, gi\|... - gi\|42409521\|ref\|NP_956430.1\| hydroxysteroid (17-beta) dehydrogenase 4 [Danio rerio], gi\|27881888\|gb\|...	132.0	[0..1]	[106..613]
gi\|66396563, gi\|... - gi\|73853814\|ref\|NP_001027490.1\| hypothetical protein LOC613082 [Xenopus (Silurana) tropicalis], gi\|6...	130.0	[0..1]	[106..626]
gi\|49257572, gi\|... - gi\|49257572\|gb\|AAH74145.1\| MGC81885 protein [Xenopus laevis], gi\|148236841\|ref\|NP_001086063.1\| MGC81...	129.0	[0..1]	[106..626]
gi\|126352659, gi... - gi\|45775304\|gb\|AAS77255.1\| 17 beta-hydroxysteroid dehydrogenase type 4 [Equus caballus], gi\|12635265...	129.0	[0..1]	[106..621]
NLTP_BOVIN - Non-specific lipid-transfer protein OS=Bos taurus GN=SCP2 PE=1 SV=2	128.0	[0..2]	[106..428]
gi\|47215955 - gi\|47215955\|emb\|CAF96357.1\| unnamed protein product [Tetraodon nigroviridis]	127.0	[0..2]	[106..426]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSDEIIEKI RNKLKESDPA RRTVVNTFQF NFTDADGNLI KSMALDIYEG SATSVDAQVT  60
   61 ISDEDFYLVG TKQKTFQEVL QQEKAKIDGD EEAINKMLEK FRINSQN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1iktA
Description:	SCP2-like domain of MFE-2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits