YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0306588, CG1...
Organism:	Drosophila melanogaster
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0306588, CG1....

Description	E-value	Query Range	Subject Range
gi\|50757538 - gi\|50757538\|ref\|XP_415557.1\| PREDICTED: similar to Hypothetical protein MGC76314 [Gallus gallus]	117.0	[0..11]	[110..381]
gi\|73971996 - gi\|73971996\|ref\|XP_538807.2\| PREDICTED: similar to AMBP protein precursor [Canis familiaris]	114.0	[0..12]	[110..304]
gi\|114626320 - gi\|114626320\|ref\|XP_001155186.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	114.0	[0..7]	[110..233]
gi\|197102775 - gi\|197102775\|ref\|NP_001127069.1\| alpha-1-microglobulin/bikunin precursor [Pongo abelii] gi\|56403596 - gi\|56403596\|emb\|CAI29600.1\| hypothetical protein [Pongo abelii]	114.0	[0..7]	[110..233]
gi\|208965810 - gi\|208965810\|dbj\|BAG72919.1\| alpha-1-microglobulin/bikunin precursor [synthetic construct] AMBP - alpha-1-microglobulin/bikunin precursor	113.0	[0..7]	[110..233]
gi\|23271605 - gi\|23271605\|gb\|AAH36146.1\| Tfpi protein [Mus musculus]	113.0	[0..3]	[111..43]
gi\|56269456 - gi\|56269456\|gb\|AAH87020.1\| Tfpi protein [Rattus norvegicus]	112.0	[0..3]	[111..46]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKINLTFL RATLVGLLSI ILLTQTAHIE AFGSGGSSSG NGAVVSCKEL NNFNCYVGRN  60
   61 EGNFCSRKDQ TKVVTRWYFD KGVCKPFNYK GCNGNRNRFC SQESCDARCG D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1bikA
Description:	X-RAY STRUCTURE OF BIKUNIN FROM THE HUMAN INTER-ALPHA-INHIBITOR COMPLEX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits