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View Structure Prediction Details

Protein: CG7708-PB, CG7708-PA
Organism: Drosophila melanogaster
Length: 614 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG7708-PB, CG7708-PA.

Description E-value Query
Range
Subject
Range
gi|91084087 - gi|91084087|ref|XP_968449.1| PREDICTED: similar to sodium/solute symporter [Tribolium castaneum]
313.0 [0..2] [495..9]

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Predicted Domain #1
Region A:
Residues: [1-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINIAGVVSI VLFYLLILVV GIWAGRKKQS GNDSEEEVML AGRSIGLFVG IFTMTATWVG  60
   61 GGYINGTAEA IYTSGLVWCQ APFGYALSLV FGGIFFANPM RKQGYITMLD PLQDSFGERM 120
  121 GGLLFLPALC GEVFWAAGIL AALGATLSVI IDMDHRTSVI LSSCIAIFYT LFGGLYSVAY 180
  181 TDVIQLFCIF IGLWMCIPFA WSNEHVGSLS DLEVDWIGH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [220-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEPKKHWLYI DYGLLLVFGG IPWQVYFQRV LSSKTAGRAQ LLSYVAAAGC ILMAIPPVLI  60
   61 GAIAKATPWN ETDYKGPY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [298-490]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLTVDETSMI LPMVLQYLTP DFVSFFGLGA VSAAVMSSAD SSVLSAASMF ARNVYKLIFR  60
   61 QKASEMEIIW VMRVAIIVVG ILATIMALTI PSIYGLWSMC SDLVYVILFP QLLMVVHFKK 120
  121 HCNTYGSLSA YIVALAIRLS GGEAILGLAP LIKYPGYDEE TKEQMFPFRT MAMLLSLVTL 180
  181 ISVSWWTKMM FES

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [491-614]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKLPPSYDYF RCVVNIPEDV QRVGDPSESG EQLSVMAGPL ARSYGAATMA GKDERNGRIN  60
   61 PALESDDDLP VAEARRINQE TAQAQVKKML DNATGVKPSG GGGGHLQSQS GMAMPTAEQD 120
  121 NTAF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle