YRC Public Data Repository - Protein Structure Prediction

Protein:	Gos28-PA
Organism:	Drosophila melanogaster
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Gos28-PA.

Description	E-value	Query Range	Subject Range
gi\|20151857 - gi\|20151857\|gb\|AAM11288.1\| RH54060p [Drosophila melanogaster]	173.0	[0..1]	[232..1]
gi\|114668291 - gi\|114668291\|ref\|XP_511386.2\| PREDICTED: golgi SNAP receptor complex member 1 isoform 2 [Pan troglod...	168.0	[0..2]	[232..5]
GOSR1_RAT - Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1 PE=1 SV=1	168.0	[0..3]	[232..6]
GOSR1_CRIGR - Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1 PE=1 SV=1	168.0	[0..3]	[232..6]
gi\|30388705 - gi\|30388705\|gb\|AAH51661.1\| Golgi SNAP receptor complex member 1 [Mus musculus]	167.0	[0..3]	[232..6]
gi\|55770858 - gi\|55770858\|ref\|NP_001007026.1\| golgi SNAP receptor complex member 1 isoform 2 [Homo sapiens]	167.0	[0..3]	[232..6]
GOSR1_PONPY - Golgi SNAP receptor complex member 1 - Pongo pygmaeus (Orangutan) GOSR1_PONAB - Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2 SV=1	166.0	[0..3]	[232..6]
gi\|73967306 - gi\|73967306\|ref\|XP_548305.2\| PREDICTED: similar to golgi SNAP receptor complex member 1 isoform 2 [C...	166.0	[0..3]	[232..6]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGSSYDVLR KQARSLENEI DLKLVAFSKI GAGSGGGGSG GLGGVDTSPL LGEHVFDSLS  60
   61 EEIEQMLEKL SSLNESMSDL PASGAAAMHT LQRHREILQG YRQEFNKICA NHTMRIEREE 120
  121 LLRGSGLATS SGSPSISGLN RREMYLKESG HLNSASHLVN DQINIAIETR DHLHAQRQAF 180
  181 KRLQTRFNDI SNRFPLISSL IQRINIKKRR DSLILGAVIG FCVILLLLYA FN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits