| Protein: | Vha100-2-PA, Vha... |
| Organism: | Drosophila melanogaster |
| Length: | 834 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Vha100-2-PA, Vha....
| Description | E-value | Query Range |
Subject Range |
|
|
822.0 | [0..1] | [834..1] |
|
Region A: Residues: [1-491] |
1 11 21 31 41 51
| | | | | |
1 MGDMFRSEEM ALCQMFIQPE AAYTSVSELG ETGCVQFRDL NVNVNAFQRK FVTEVRRCDE 60
61 LERKIRYIET EIKKDGIVLP DIQDDIPRAP NPREIIDLEA HLEKTESEMI ELAQNEVNMK 120
121 SNYLELTELR KVLENTQGFF SDQEVLNLDS SNRAGGDNDA AAQHRGRLGF VAGVINRERV 180
181 FAFERMLWRI SRGNVFLKRS DLDEPLNDPA TGHPIYKTVF VAFFQGEQLK NRIKKVCTGF 240
241 HASLYPCPSS HNEREEMVRN VRTRLEDLKL VLSQTEDHRS RVLATVSKNL PSWSIMVKKM 300
301 KAIYHTLNLF NMDVTKKCLI GECWVPTNDL PVVQKALSDG SAAVGSTIPS FLNVIDTNEQ 360
361 PPTFNRTNKF TRGFQNLIDA YGVASYRECN PALYTCITFP FLFAVMFGDL GHGLILVLFG 420
421 AWMVLCERKL ARIRNGGEIW NIFFGGRYII LLMGLFAMYT GLVYNDVFSK SMNLFGSRWF 480
481 NNYNTTTVLT N
|
| Detection Method: |  |
| Confidence: | 5.39794 |
| Match: | 1ciiA |
| Description: | COLICIN IA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [492-677] |
1 11 21 31 41 51
| | | | | |
1 PNLQLPPNSS AVGVYPFGMD PVWQLADNKI IFLNSFKMKL SIIFGVLHMV FGVCMSVVNF 60
61 THFKRYASIF LEFVPQILFL LLLFGYMVFM MFFKWFSYNA RTSFQPETPG CAPSVLIMFI 120
121 NMMLFKNTEP PKGCNEFMFE SQPQLQKAFV LIALCCIPWM LLGKPLYIKF TRKNKAHANH 180
181 NGQLTG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [678-834] |
1 11 21 31 41 51
| | | | | |
1 NIELAEGETP LPTGFSGNEE NAGGAHGHDD EPMSEIYIHQ AIHTIEYVLS TISHTASYLR 60
61 LWALSLAHAQ LSEVLWQMVL SLGLKMSGVG GAIGLFIIFG AWCLFTLAIL VLMEGLSAFL 120
121 HTLRLHWVEF MSKFYEGMGY AFQPFSFKAI LDGEEEE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
