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View Structure Prediction Details

Protein: CG14880-PA, CG14...
Organism: Drosophila melanogaster
Length: 637 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG14880-PA, CG14....

Description E-value Query
Range
Subject
Range
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...
225.0 [0..84] [634..1455]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAQTQIIPT PWRLLTLALF CSALFLASEA QNAIPKTNPA SLLIQKTSFS CAGRPAGYYA  60
   61 DVETGCQVYH MCDGLGRQFS YTCPNTTLFQ QRMLICDHWY M

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.9
Match: 1dqcA
Description: Tachycitin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [102-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNCSKAESNY AANLLIGQRD KPFVNDEENS LRTPRPDLLD RPYAPDYSGE SFRSQYKQFT  60
   61 SNQNQIRDES VKGAGAGKSD PQISQTRWRI PPPSRTILPP AYEPQIELPS AQSAKPRIPI 120
  121 ITSTTTTTRA TTTTRPTTTT RATTTTTTTR RPPVTARPKE ALHNRRPNFQ EHDMDDLGTS 180
  181 HSTRYNTSAD FNSAESPLRE TKQSSTKLTK FIKPPSKIYE PPFVYPIYNL EESQTQNAAV 240
  241 ATTLRTST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [350-460]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAPFSPVPSR KEVSTTTPRP LSRPTTLAGV PFSSATHPTT VTTVGVPPRS DNRTPAPAQS  60
   61 FRLATPTSTA APPSRPAQLP FNDLLPPFVD FVPHDIATTQ GPPIYYEWKV P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [461-637]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNGLEPPKLD PPIGVDGREY PETTGDYGVT SKQDVFNTRL NDIGSHQKKP VQITSPLQQS  60
   61 STSHRLAISR SIKPKEEQES AQRRSDVVAS STDISHLRKQ FLIPEYAFPL ETIGRTGYGP 120
  121 GAGAAAGGSG SSNGDLYNSF QLKIPEQRAK WFGENPKCPE CHPSFVLPGT CEPCLRR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle