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View Structure Prediction Details

Protein: Zip3-PA
Organism: Drosophila melanogaster
Length: 495 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Zip3-PA.

Description E-value Query
Range
Subject
Range
gi|17944960 - gi|17944960|gb|AAL48543.1| RE02747p [Drosophila melanogaster]
317.0 [0..1] [495..1]

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Predicted Domain #1
Region A:
Residues: [1-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQTQVNNFL KCFLQIDEPS NRWTSRHDGE DLDDNDHDHD HDDDNDDDES GVLVAKVTAM  60
   61 VVLFCASAIC GSIPFLLNRC YRWTENQTNA RSAIVVKCLL YFGGGVLLAT TFLHLLPEVQ 120
  121 EVVEELQECG IIGELTFPLA ELLMCCGFFL MYFIEEAMHT YVHHHQKDEA GAAFERGHSI 180
  181 RNSHLLKPTE GNATTPTAPP APLAGTAEL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [210-417]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTLSVQNLLQ NDLEQQKFAT KPQQQANGHG HSHGHGHGHS HLPVIADDAD AGDMLASSLR  60
   61 GLFIVSALSL HELFEGMAIG LESSASSVWF MFGAVSAHKL VLAFCVGVEL IVARTRMLLA 120
  121 VLYVLTFAVV SPLGIGIGIL INHGEETSGP SLVSAILQGF ACGTLIYVVF FEILSKNRSG 180
  181 LRAYLALFVG FLVMFGLQQL TSIGGHGH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [418-495]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SHSHSSCSTS EHTHNHQETE TETRSASGHT HGHQHDHDHP HHHNHAEELA TVHNYEQQLQ  60
   61 LLRQVTQKLL EAHPKKDA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle