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View Structure Prediction Details

Protein: tara-PB
Organism: Drosophila melanogaster
Length: 912 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tara-PB.

Description E-value Query
Range
Subject
Range
gi|39592304, gi|... - gi|39592304|emb|CAE75525.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi|187020927|em...
gi|157762282 - gi|157762282|ref|XP_001673483.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]
331.0 [0..3] [911..1013]

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Predicted Domain #1
Region A:
Residues: [1-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCTEVNSAMG LQATAATKRK HELTFDSKDA NTTYTGNCAP PPVKANKWAI SNNNYLESLE  60
   61 EQQQQQQSPS EPAVESNNNH IVLEASMDAL KPTEPSISNG HEVTTAVAAM KSQAEVPLPP 120
  121 TASAAIPED

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [130-912]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIARLEVVTS AVPCEPWTSN GPTTPSAVAG PAASAEPVDC ISKLQAVAVP SDPWGSIATR  60
   61 STLATTLLSA DELDDDDDDF EDDYEEEESI IPTYCPMRYH PFVPHPHPHS HQLPSHPHQQ 120
  121 QPQQLSQQQP HPQQQQLAQQ QQQHPQQQRS YAPGYGSRQP NYYSEPFPQQ NCSRTGGPQH 180
  181 MTQSPPTPQQ ARGFAPPQWA TAGSSPANPS SGAQQFYEPT NGGAYAPPAA PQQTIRCAEN 240
  241 GKSYLDLGCS SGASGNAGGS PISPPPSSAP VVPFAGLPLH GLPLKRCCDG RPGGWCSANR 300
  301 SCYKDTRLKI RNLSMFKLSR FRQVSEQSLY RSVLICNTLK RIDREIEAEA KELHQAAQQH 360
  361 HQQAAAAAAA AAAAAAQAAQ YHPAYQQQQQ QQQSPPAPLH PHTQQQMDYA PVLNCARLAN 420
  421 MDHYQQLSFQ PQHQQQQQPS QPHSYHERLD SQPAYRGAAA GAGSFATQPS NCDTSAGASS 480
  481 SNTSGNSNNS SATAASSNSS LHPYDHYPFR ESQSGRATPF PACPTTTAAA AAASAAAAAS 540
  541 SGGAATTLSS NISSSPASSS TSSNTTSSTV ISSSSGNTVS SNGTTPVAPT ASSSNCDTSD 600
  601 SGYADDDSTR SINWSSVLSL SSQSALDPLN NNDLFSILPS AATPTAVPVS VPASSSSSSS 660
  661 GSTLAFSGSF TTVQASGGSS SSCGSSSTTA TFTTLSTISS ATHSLTSSYV SSISSNVSAG 720
  721 ANTWEYGFLD MEFGLGSEFT ELVPSCKLSS EDLFKSGLGG QVVTASRLHD NELEHPAHIM 780
  781 VGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.045757
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle