YRC Public Data Repository - Protein Structure Prediction

Protein:	mtSSB-PA
Organism:	Drosophila melanogaster
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mtSSB-PA.

Description	E-value	Query Range	Subject Range
SSB_SHEHA - Single-stranded DNA-binding protein OS=Shewanella hanedai GN=ssb PE=3 SV=1	163.0	[0..33]	[144..1]
gi\|88818879, gi\|... - gi\|88858653\|ref\|ZP_01133294.1\| Single-strand binding protein (SSB) (Helix-destabilizing protein) [Ps...	162.0	[0..34]	[145..1]
gi\|78188206, gi\|... - gi\|78188206\|ref\|YP_378544.1\| single-strand binding protein [Chlorobium chlorochromatii CaD3], gi\|781...	161.0	[0..33]	[145..12]
gi\|110589368\|gb\|... - single stranded DNA-binding protein [endosymbiont of Riftia pachyptila] gi\|110589368 - gi\|110589368\|gb\|ABG77193.1\| single stranded DNA-binding protein [Endoriftia persephone 'Hot96_1+Hot9...	161.0	[0..31]	[144..6]
gi\|127511469, gi... - gi\|78367116\|ref\|ZP_00837390.1\| Single-strand binding protein [Shewanella sp. PV-4], gi\|78360889\|gb\|E...	161.0	[0..33]	[144..1]
SO4028 - single-strand binding protein SSB_SHEON - Single-stranded DNA-binding protein OS=Shewanella oneidensis (strain MR-1) GN=ssb PE=3 SV=1	161.0	[0..33]	[145..1]
gi\|115364973, gi... - gi\|115378034\|ref\|ZP_01465214.1\| single-strand binding protein [Stigmatella aurantiaca DW4/3-1], gi\|1...	160.0	[0..34]	[145..1]
gi\|91795673, gi\|... - gi\|92112583\|ref\|YP_572511.1\| single-strand binding protein [Chromohalobacter salexigens DSM 3043], g...	160.0	[0..34]	[145..1]
gi\|67919360, gi\|... - gi\|67919360\|ref\|ZP_00512940.1\| Single-strand binding protein [Chlorobium limicola DSM 245], gi\|67783...	160.0	[0..34]	[146..1]
gi\|114564862, gi... - gi\|114564862\|ref\|YP_752376.1\| single-strand binding protein [Shewanella frigidimarina NCIMB 400], gi... gi\|1490785 - gi\|1490785\|gb\|AAB57887.1\| single stranded DNA-binding protein [Shewanella sp. SC2A]	160.0	[0..33]	[146..1]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHTRRMLNP LLTGLRNLPA RGATTTTAAA PAKVEKTVNT VTILGRVGAD PQLRGSQEHP  60
   61 VVTFSVATHT NYKYENGDWA QRTDWHRVVV FKPNLRDTVL EYLKKGQRTM VQGKITYGEI 120
  121 TDQQGNQKTS TSIIADDVLF FRDANN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.09691
Match:	1eqqA
Description:	SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits