YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0311409, blp-PA
Organism:	Drosophila melanogaster
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0311409, blp-PA.

Description	E-value	Query Range	Subject Range
DNAJ_CARHZ - Chaperone protein DnaJ OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901...	126.0	[0..58]	[125..2]
DNJ2_AQUAE, DNAJ... - (O66921) Chaperone protein dnaJ-2, Chaperone protein DnaJ 2 OS=Aquifex aeolicus GN=dnaJ2 PE=3 SV=1 DNAJ2_AQUAE - Chaperone protein DnaJ 2 OS=Aquifex aeolicus (strain VF5) GN=dnaJ2 PE=3 SV=1	124.0	[0..55]	[133..3]
gi\|50355737, gi\|... - gi\|50355737\|gb\|AAT75262.1\| putative DnaJ like protein [Oryza sativa (japonica cultivar-group)], gi\|...	123.0	[0..50]	[135..3]
gi\|110617800 - gi\|110617800\|gb\|ABG78615.1\| J-domain protein [Triticum aestivum]	123.0	[0..46]	[136..1]
DNAJ_EHRRW - Chaperone protein DnaJ OS=Ehrlichia ruminantium (strain Welgevonden) GN=dnaJ PE=3 SV=1	123.0	[0..56]	[132..1]
DNAJ_EHRRG - Chaperone protein DnaJ OS=Ehrlichia ruminantium (strain Gardel) GN=dnaJ PE=3 SV=1	123.0	[0..56]	[132..1]
gi\|7488735, gi\|3... - pir\|\|T09338 DnaJ-like protein MsJ1 - alfalfa, gi\|3202020\|gb\|AAC19391.1\| DnaJ-like protein MsJ1 [Medi...	122.0	[0..48]	[139..2]
gi\|81075628 - gi\|81075628\|gb\|ABB55383.1\| DnaJ-like protein-like [Solanum tuberosum]	122.0	[0..50]	[127..3]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKYIAQIIV LGAQAVGRAF TKALRQEIAA SQEAARRAGG GKQGDKSAES NLRTGMTLEE  60
   61 AKQILNIDDP KNVDAITKNY EHLFQVNERS KGGSFYIQSK VFRAKERLDH EIKAHEQPRS 120
  121 SNTEAAQDTA EESQSRSRQR R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	2ctwA
Description:	Solution structure of J-domain from mouse DnaJ subfamily C menber 5
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits