YRC Public Data Repository - Protein Structure Prediction

Protein:	glob1-PC, glob1-...
Organism:	Drosophila melanogaster
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glob1-PC, glob1-....

Description	E-value	Query Range	Subject Range
gi\|50731454 - gi\|50731454\|ref\|XP_425673.1\| PREDICTED: similar to Hemoglobin epsilon chain [Gallus gallus]	172.0	[0..2]	[147..46]
gi\|73988393 - gi\|73988393\|ref\|XP_542374.2\| PREDICTED: similar to Hemoglobin epsilon chain [Canis familiaris]	171.0	[0..2]	[147..49]
HBG2_HYLLA - Hemoglobin subunit gamma-2 OS=Hylobates lar GN=HBG2 PE=2 SV=2	169.0	[0..2]	[147..5]
gi\|1360668, gi\|3... - gi\|38088\|emb\|CAA37498.1\| gamma-globin-2(A) [Macaca mulatta], gi\|342109\|gb\|AAA36845.1\| gamma-globin, ...	169.0	[0..2]	[147..5]
HBG1_PONPY - Hemoglobin subunit gamma-1 OS=Pongo pygmaeus GN=HBG1 PE=2 SV=2	169.0	[0..2]	[147..5]
gi\|183885 - gi\|183885\|gb\|AAB50159.1\| hemoglobin gamma-G [Homo sapiens]	168.0	[0..2]	[147..10]
HBG_MACNE - Hemoglobin subunit gamma OS=Macaca nemestrina GN=HBG PE=1 SV=1	168.0	[0..2]	[147..4]
HBE_MOUSE - Hemoglobin subunit epsilon-Y2 OS=Mus musculus GN=Hbb-y PE=1 SV=2	167.0	[0..2]	[147..5]
gi\|62640984, gi\|... - gi\|62640984\|ref\|XP_579276.1\| PREDICTED: hemoglobin, epsilon 1 (predicted) [Rattus norvegicus], gi\|57...	167.0	[0..2]	[147..5]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSDEVQLIK KTWEIPVATP TDSGAAILTQ FFNRFPSNLE KFPFRDVPLE ELSGNARFRA  60
   61 HAGRIIRVFD ESIQVLGQDG DLEKLDEIWT KIAVSHIPRT VSKESYNQLK GVILDVLTAA 120
  121 CSLDESQAAT WAKLVDHVYG IIFKAIDDDG NAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	2bk9A
Description:	Drosophila Melanogaster globin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits