YRC Public Data Repository - Protein Structure Prediction

Protein:	CG14877-PA
Organism:	Drosophila melanogaster
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG14877-PA.

Description	E-value	Query Range	Subject Range
gi\|56420472, gi\|... - gi\|56420472\|ref\|YP_147790.1\| ABC transporter (substrate-binding protein) [Geobacillus kaustophilus H...	167.0	[0..3]	[251..9]
gi\|196252144, gi... - gi\|196252144\|ref\|ZP_03150806.1\| urea ABC transporter, urea binding protein [Clostridium thermocellum... gi\|125974327, gi... - gi\|67874946\|ref\|ZP_00504497.1\| Extracellular ligand-binding receptor [Clostridium thermocellum ATCC ...	162.0	[0..3]	[251..15]
gi\|146297472, gi... - gi\|82499532\|ref\|ZP_00884975.1\| ABC transporter (substrate-binding protein) [Caldicellulosiruptor sac...	162.0	[0..1]	[251..11]
gi\|70734100, gi\|... - gi\|70734100\|ref\|YP_257740.1\| branched-chain amino acid ABC transporter, periplasmic amino acid-bindi...	160.0	[0..25]	[252..12]
gi\|110834846, gi... - gi\|110834846\|ref\|YP_693705.1\| ABC transporter, periplasmic substrate-binding protein [Alcanivorax bo...	160.0	[0..6]	[251..20]
gi\|7469489 - pir\|\|S76228 hypothetical protein - Synechocystis sp. (strain PCC 6803) gi\|16331081, gi\|... - gi\|1653574\|dbj\|BAA18487.1\| negative aliphatic amidase regulator [Synechocystis sp. PCC 6803], gi\|163...	160.0	[0..6]	[248..16]
tr\|E4R7L2\|E4R7L2... - Extracellular ligand-binding receptor OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_4654 PE=4 SV... gi\|24986632, gi\|... - gi\|26991547\|ref\|NP_746972.1\| extracellular ligand-binding receptor [Pseudomonas putida KT2440], gi\|2... gi\|148514005, gi... - gi\|82739742\|ref\|ZP_00902532.1\| branched-chain amino acid ABC transporter, periplasmic amino acid-bin...	159.0	[0..25]	[252..12]
gi\|116053062, gi... - gi\|116053062\|ref\|YP_793381.1\| putative binding protein component of ABC transporter [Pseudomonas aer...	159.0	[0..25]	[252..12]
gi\|11351114 - pir\|\|C83032 probable binding protein component of ABC transporter PA4913 [imported] - Pseudomonas ae... gi\|254238369, gi... - gi\|254238369\|ref\|ZP_04931692.1\| hypothetical protein PACG_04507 [Pseudomonas aeruginosa C3719], gi\|1... gi\|15600106, gi\|... - gi\|9951190\|gb\|AAG08298.1\|AE004904_6 probable binding protein component of ABC transporter [Pseudomon... gi\|254244194, gi... - gi\|254244194\|ref\|ZP_04937516.1\| hypothetical protein PA2G_05039 [Pseudomonas aeruginosa 2192], gi\|19...	158.0	[0..25]	[252..12]
gi\|69256966, gi\|... - gi\|69256966\|ref\|ZP_00606354.1\| Extracellular ligand-binding receptor [Magnetococcus sp. MC-1], gi\|68...	157.0	[0..17]	[252..3]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLVLLLVGL VFGPKDCVAT CREEPARDCE AICDANGRNC TIRALVLLPD DNMYQASLPR  60
   61 VLPILKVAEQ QIRSKSLIPS HIDFEWLAHD TKCDASLGVI KAMDGIIKQC AQVIFGPVCD 120
  121 YSLAAVSRIT KYFNSQGTPL ISVGGSTYDF EQKKTDCNDE FYMLLRTGML SFETISELTI 180
  181 NVMKRHNWSH SIFYYERDGQ RSVAGMHTCF LMMKSLGKQM RNENMTFAQF PLEPNLTNRT 240
  241 EEMRREIGNK HASK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1yk1A
Description:	No description for 1yk1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits