YRC Public Data Repository - Protein Structure Prediction

Protein:	CG14870-PA
Organism:	Drosophila melanogaster
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG14870-PA.

Description	E-value	Query Range	Subject Range
B9D1_RAT - B9 domain-containing protein 1 OS=Rattus norvegicus GN=B9d1 PE=2 SV=1	255.0	[0..46]	[238..2]
B9D1_MOUSE - B9 domain-containing protein 1 OS=Mus musculus GN=B9d1 PE=1 SV=1	253.0	[0..46]	[238..2]
gi\|109113603 - gi\|109113603\|ref\|XP_001100199.1\| PREDICTED: similar to B9 protein isoform 3 [Macaca mulatta]	253.0	[0..46]	[238..2]
B9D1 - B9 protein domain 1 gi\|114668726 - gi\|114668726\|ref\|XP_001153772.1\| PREDICTED: B9 protein isoform 7 [Pan troglodytes]	253.0	[0..46]	[238..2]
gi\|76644175, gi\|... - gi\|76644175\|ref\|XP_581610.2\| PREDICTED: similar to B9 [Bos taurus], gi\|194675998\|ref\|XP_001790645.1\|...	252.0	[0..46]	[238..2]
gi\|114669526 - gi\|114669526\|ref\|XP_001172592.1\| PREDICTED: Meckel syndrome, type 1 isoform 3 [Pan troglodytes]	250.0	[0..25]	[225..283]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASEGISLP GNEETTPPHE KHKQKAKKAK KKSRSAKESV PNAMDAKATA SYFSLSIVGQ  60
   61 IVSATFPLGP DKEFVFLRYE MVAGPDWQLS SGPQHGLTQL ATNRRGHFNE PIVFNMPIEV 120
  121 TYKSTSPYGW PQILVTVFGR SG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.965
Match:	1k8gA
Description:	Telomere end binding protein alpha subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [143-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGRETLLGYA HIHLPVFGSR RPADQTEQLQ APILMPKCPN MMADITSWLL RREPELKDPK  60
   61 VLLDNLKCKG LSMESYGSLQ FQLSSVMRGA RKLGYHWHS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits