YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0292327, FBp...
Organism:	Drosophila melanogaster
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0292327, FBp....

Description	E-value	Query Range	Subject Range
gi\|125774251, gi... - gi\|54638121\|gb\|EAL27523.1\| GA13307-PA [Drosophila pseudoobscura], gi\|125774251\|ref\|XP_001358384.1\| G...	352.0	[0..5]	[261..1]
gi\|62901834 - gi\|62901834\|gb\|AAY18868.1\| CGI-32 [synthetic construct]	330.0	[0..11]	[260..38]
ENSPTRT00000005383 - null CUTC - cutC copper transporter homolog (E. coli)	328.0	[0..11]	[260..27]
gi\|109090222 - gi\|109090222\|ref\|XP_001106529.1\| PREDICTED: cutC copper transporter homolog [Macaca mulatta]	328.0	[0..11]	[260..27]
gi\|109463988, gi... - gi\|62642320\|ref\|XP_342053.2\| PREDICTED: similar to Copper homeostasis protein cutC homolog [Rattus n...	326.0	[0..11]	[260..26]
CUTC_MOUSE - Copper homeostasis protein cutC homolog OS=Mus musculus GN=Cutc PE=1 SV=1	324.0	[0..11]	[260..26]
gi\|73998621 - gi\|73998621\|ref\|XP_534987.2\| PREDICTED: similar to Copper homeostasis protein cutC homolog [Canis fa...	320.0	[0..11]	[260..27]
CUTC_BACTN - Copper homeostasis protein CutC OS=Bacteroides thetaiotaomicron GN=cutC PE=3 SV=1 CUTC_BACTN - Copper homeostasis protein CutC OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC...	312.0	[0..8]	[262..2]
CUTC_VIBVY - Copper homeostasis protein CutC OS=Vibrio vulnificus (strain YJ016) GN=cutC PE=3 SV=1	312.0	[0..8]	[261..1]

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Predicted Domain #1

Region A:
Residues: [1-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIREMSNHDI KLEVCVDSIR SAFAAEEGGA SRIELCSALG EGGLTPSIGT LKTIKETLTM  60
   61 PIYCMLRPRR GTDFVYSDEE MCALLTDMDL LRENGADGFV FGSLNPDRSI NVDQCRHVLL 120
  121 ASGGLPVTFH RAFDLTDQKS MDENVDMLRE LGFRRLLSSG FRPTAADGVD CLAQLIAKHQ 180
  181 RDFIVMPGAG IKVSNLEEIL TVSRCLEFHA SALDTAGEDY VAPTTTRMEC DVTMGKQDVD 240
  241 PYYGTNSIVV RKMVTIAKAM SSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.0
Match:	1twdA
Description:	Crystal Structure of the Putative Copper Homeostasis Protein (CutC) from Shigella flexneri, Northeast Structural Genomics Target SfR33
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.41268851081267	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: