YRC Public Data Repository - Protein Structure Prediction

Protein:	CG4338-PA
Organism:	Drosophila melanogaster
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4338-PA.

Description	E-value	Query Range	Subject Range
gi\|109127139 - gi\|109127139\|ref\|XP_001088384.1\| PREDICTED: similar to CG4338-PA [Macaca mulatta]	389.0	[0..1]	[273..1]
C16orf42 - chromosome 16 open reading frame 42	389.0	[0..1]	[272..1]
TSR3_MOUSE - Ribosome biogenesis protein TSR3 homolog OS=Mus musculus GN=Tsr3 PE=1 SV=1	379.0	[0..6]	[268..1]
gi\|149052099, gi... - ref\|XP_340769.1\| similar to RIKEN cDNA 0610007P22 [Rattus norvegicus], gi\|149052099\|gb\|EDM03916.1\| s...	371.0	[0..1]	[270..1]
gi\|61825119, gi\|... - gi\|61825119\|ref\|XP_585533.1\| PREDICTED: similar to OTTHUMP00000045502 isoform 1 [Bos taurus], gi\|149...	362.0	[0..1]	[271..1]
gi\|207341294 - gi\|207341294\|gb\|EDZ69391.1\| YOR006Cp-like protein [Saccharomyces cerevisiae AWRI1631] TSR3_YEAST - Ribosome biogenesis protein TSR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR3 PE... TSR3 - Protein required for correct processing of the 20S pre-rRNA at site D to generate mature 18S rRNA; g...	352.0	[0..6]	[261..1]
gi\|54639649\|gb\|E... - GA18120-PA [Drosophila pseudoobscura], GA18120 [Drosophila pseudoobscura pseudoobscura] gi\|54639649, gi\|... - gi\|54639649\|gb\|EAL29051.1\| GA18120 [Drosophila pseudoobscura pseudoobscura], gi\|125778282\|ref\|XP_001...	347.0	[0..16]	[250..15]
gi\|45185694, gi\|... - gi\|45185694\|ref\|NP_983410.1\| ACR007Wp [Ashbya gossypii ATCC 10895], gi\|44981449\|gb\|AAS51234.1\| ACR00... gi\|44981449 - gi\|44981449\|gb\|AAS51234.1\| ACR007Wp [Ashbya gossypii ATCC 10895]	342.0	[0..31]	[266..10]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRNRGKGK KGGGGPYRNV KANHNCARSF AQQANELASS SSSENESSDS ESSGDGAQND  60
   61 LGQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [64-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPEFAVAMWD LNHCDPKKCS GRKLARLGLI SNLRLGQKFP GLVLSPVGQL CVSPLDRDVV  60
   61 ASSGVAVIDC SWAKLDETPF GRMRSPHPRL LPFLVAANPI NYGKPCKLSC VEAIAATLYI 120
  121 CGFTEEARWF LGKFSWGHAF LELNDKLLNA YAACKSSDEI VKVQNEYLEK EQQERDKPRD 180
  181 LRDFYPTSSS SSSSETETEG DDEDTKAKPK N

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	95.408935
Match:	PF04034.4
Description:	No description for PF04034.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits