YRC Public Data Repository - Protein Structure Prediction

Protein:	Oscp-PA
Organism:	Drosophila melanogaster
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Oscp-PA.

Description	E-value	Query Range	Subject Range
gi\|57108786 - gi\|57108786\|ref\|XP_535587.1\| PREDICTED: similar to ATP synthase O subunit, mitochondrial precursor (...	202.0	[0..4]	[207..10]
ATPO_PIG - ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1	199.0	[0..4]	[207..10]
gi\|51593241 - gi\|51593241\|gb\|AAH78592.1\| LOC446923 protein [Xenopus laevis]	199.0	[0..1]	[207..13]
ATPO_PONPY - ATP synthase subunit O, mitochondrial precursor - Pongo pygmaeus (Orangutan) ATPO_PONAB - ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1	197.0	[0..4]	[209..10]
gi\|109065448 - gi\|109065448\|ref\|XP_001090216.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F1 complex,...	197.0	[0..4]	[208..10]
ATPO_BOVIN - ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2	196.0	[0..4]	[207..10]
ATP5O - ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit gi\|55655775 - gi\|55655775\|ref\|XP_531443.1\| PREDICTED: mitochondrial ATP synthase, O subunit [Pan troglodytes]	194.0	[0..4]	[207..10]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASINKLALL SRTLSSAAAQ ATVKPPVQVF GLEGRYATAL YSAASKLSQL DQVEKDLTAL  60
   61 QATIRSDKKL REYVTSPIIN KKVMATALKE ASEKLRFAPA TVNLLGLLAD NGRLKKLDTV 120
  121 INAYKTIMAA HRGEVVCEVV TAKPL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.154902
Match:	2bo5A
Description:	Bovine oligomycin sensitivity conferral protein N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [146-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DASQSKQLEG ALKSFLKGNE SLKITSRVDP SIIGGLIVSI GDKYVDMSIA TKVKLYTDVI  60
   61 QTAA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits