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View Structure Prediction Details

Protein: Mf-PD
Organism: Drosophila melanogaster
Length: 312 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Mf-PD.

Description E-value Query
Range
Subject
Range
gi|220959816, gi... - gi|220959816|gb|ACL92451.1| Mf-PB [synthetic construct], gi|220951868|gb|ACL88477.1| Mf-PB [syntheti...
Mf-PB - The gene Myofilin is referred to in FlyBase by the symbol Dmel\Mf (CG6803, FBgn0038294). It is a pro...
442.0 [0..1] [312..1]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKNHLEMIG RNESPSKKAK FWQSYIRSLK GSEDIRAHEA PRASRPYSSY LDSPSYRSIY  60
   61 DEPATANERV QSSGYRYLPV SRDTYGYSPR AIYDHHYSRT IPA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NYDAEKAWND HLKRMQEIER RYPSRYGLYL RDKPLTPNSL VPLEYEPEDK LLAELNKARR  60
   61 SASPFRPART TRAGSEPYVP PPSYWNREGS VPRGGPSVFD RATSLAPFTR PSFRASSLEP 120
  121 LDELFERLPI FHPRNRFRDL LSPSPNLPIS SIVRDPFWWD V

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [265-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDLVPFRATS VPRASSPVAR DSYLSPVKNR YLWSKHPARP LTPHRSIL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle