YRC Public Data Repository - Protein Structure Prediction

Protein:	VhaPPA1-1-PA, FB...
Organism:	Drosophila melanogaster
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VhaPPA1-1-PA, FB....

Description	E-value	Query Range	Subject Range
gi\|50751470 - gi\|50751470\|ref\|XP_422414.1\| PREDICTED: similar to ATPase, H+ transporting, V0 subunit B; ATPase, H+...	182.0	[0..2]	[210..145]
gi\|47212525 - gi\|47212525\|emb\|CAG06230.1\| unnamed protein product [Tetraodon nigroviridis]	181.0	[0..3]	[201..11]
gi\|109127279 - gi\|109127279\|ref\|XP_001085529.1\| PREDICTED: similar to Vacuolar ATP synthase 16 kDa proteolipid subu...	176.0	[0..63]	[205..288]
gi\|27694747 - gi\|27694747\|gb\|AAH43805.1\| MGC64475 protein [Xenopus laevis]	175.0	[0..6]	[205..19]
gi\|52789283 - gi\|52789283\|gb\|AAH83129.1\| Atp6v0c protein [Mus musculus]	172.0	[0..25]	[205..34]
gi\|125776563, gi... - gi\|54639060\|gb\|EAL28462.1\| GA20025 [Drosophila pseudoobscura pseudoobscura], gi\|125776563\|ref\|XP_001... gi\|194112167, gi... - gi\|195152371\|ref\|XP_002017110.1\| GL21698 [Drosophila persimilis], gi\|194112167\|gb\|EDW34210.1\| GL2169... gi\|125776563\|ref... - GA20025-PA [Drosophila pseudoobscura], GA20025 [Drosophila pseudoobscura pseudoobscura]	167.0	[0..1]	[212..1]
gi\|58381684, gi\|... - gi\|58381684\|ref\|XP_311406.2\| ENSANGP00000025336 [Anopheles gambiae str. PEST], gi\|55242897\|gb\|EAA070...	167.0	[0..45]	[205..43]
gi\|134091324, gi... - gi\|50255735\|gb\|EAL18467.1\| hypothetical protein CNBJ1090 [Cryptococcus neoformans var. neoformans B-...	166.0	[0..13]	[207..7]
gi\|58261016, gi\|... - gi\|58261016\|ref\|XP_567918.1\| hydrogen ion transporter [Cryptococcus neoformans var. neoformans JEC21...	163.0	[0..35]	[206..22]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQIRTVVS QTFLWLFLAV ATILTLYFVM TGKGERVSVG WFLASSNPYM WACLGIGLSV  60
   61 SLSVVGAALG IHTTGTSIVG GGVKAPRIKT KNLISVIFCE AVAIYGLITA IVLSGQLEQF 120
  121 SMETALSQAA IQNTNWFSGY LIFGAGLAVG LVNLFCGIAV GIVGSGAALS DAANAALFVK 180
  181 ILIVEIFGSA IGLFGLIVGI YMTSKSKMGD KE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	2bl2A
Description:	The membrane rotor of the V-type ATPase from Enterococcus hirae
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits