YRC Public Data Repository - Protein Structure Prediction

Protein:	Cys-PA
Organism:	Drosophila melanogaster
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cys-PA.

Description	E-value	Query Range	Subject Range
gi\|7789, gi\|7438235 - gi\|7789\|emb\|CAA38963.1\| cystatin-like protein [Drosophila melanogaster], pir\|\|S12913 cystatin - frui...	126.0	[0..1]	[126..24]
CYT6_ARATH - Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2	123.0	[0..4]	[120..2]
gi\|18158608 - gi\|18158608\|gb\|AAL59842.1\| cysteine protease inhibitor CPI-1 [Brassica oleracea]	121.0	[0..25]	[125..1]
gi\|82749763 - gi\|82749763\|gb\|ABB89766.1\| At3g12490-like protein [Boechera stricta]	120.0	[0..6]	[123..14]
gi\|809608, gi\|10... - gi\|809608\|emb\|CAA60610.1\| cysteine proteinase inhibitor [Zea mays], pir\|\|S54828 cysteine proteinase ...	120.0	[0..24]	[121..36]
gi\|54638513\|gb\|E... - GA20790-PA [Drosophila pseudoobscura], GA20790 [Drosophila pseudoobscura pseudoobscura] gi\|125775041, gi... - gi\|54638513\|gb\|EAL27915.1\| GA20790 [Drosophila pseudoobscura pseudoobscura], gi\|125775041\|ref\|XP_001...	119.0	[0..1]	[126..1]
gi\|18874516 - gi\|18874516\|gb\|AAL79831.1\|AF469485_1 cystatin [Sandersonia aurantiaca]	118.0	[0..25]	[124..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVVKSLCIL GLVLVSLIAT QAADEQVVGG VSQLEGNSRK EALELLDATL AQLATGDGPS  60
   61 YKAINVTSVT GQVVAGSLNT YEVELDNGSD KKQCTVKIWT QPWLKENGTN IKIKCSGDDG 120
  121 ELDRTW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	1eqkA
Description:	Phytocystatin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits