YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL11-PA
Organism:	Drosophila melanogaster
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL11-PA.

Description	E-value	Query Range	Subject Range
gi\|55242461, gi\|... - gi\|58383599\|ref\|XP_312637.2\| AGAP002332-PA [Anopheles gambiae str. PEST], gi\|55242461\|gb\|EAA07476.2\|... AGAP002332-PA - mRpL11: 39S ribosomal protein L11, mitochondrial\|protein_coding\|2R:19974177:19974767:1\|gene:AGAP0023...	222.0	[0..1]	[196..1]
gi\|157108939, gi... - gi\|157108939\|ref\|XP_001650452.1\| 50S robosomal protein L11 [Aedes aegypti], gi\|108879173\|gb\|EAT43398...	218.0	[0..1]	[196..1]
gi\|125773955, gi... - gi\|54637972\|gb\|EAL27374.1\| GA17398 [Drosophila pseudoobscura pseudoobscura], gi\|125773955\|ref\|XP_001... gi\|194101879, gi... - gi\|195143903\|ref\|XP_002012936.1\| GL23859 [Drosophila persimilis], gi\|194101879\|gb\|EDW23922.1\| GL2385... gi\|125773955\|ref... - GA17398-PA [Drosophila pseudoobscura], GA17398 [Drosophila pseudoobscura pseudoobscura]	211.0	[0..1]	[196..1]
gi\|114626854 - gi\|114626854\|ref\|XP_528436.2\| PREDICTED: similar to 60S ribosomal protein L12 [Pan troglodytes]	208.0	[0..9]	[179..213]
gi\|91086019 - gi\|91086019\|ref\|XP_972971.1\| PREDICTED: similar to 39S ribosomal protein L11, mitochondrial [Triboli...	204.0	[0..1]	[196..1]
gi\|88812768, gi\|... - gi\|88812768\|ref\|ZP_01128014.1\| ribosomal protein L11 [Nitrococcus mobilis Nb-231], gi\|88790006\|gb\|EA...	200.0	[0..11]	[162..1]
gi\|62083501 - gi\|62083501\|gb\|AAX62475.1\| mitochondrial ribosomal protein L11 [Lysiphlebus testaceipes]	200.0	[0..1]	[196..1]
RL11_ALKEH - 50S ribosomal protein L11 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) G...	199.0	[0..11]	[159..1]
gi\|109112216 - gi\|109112216\|ref\|XP_001095922.1\| PREDICTED: similar to 60S ribosomal protein L12 [Macaca mulatta]	198.0	[0..9]	[179..113]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKAAGKLKS LKKTVERVTH TSKLKTNIPA GMAAAGPPLG PMLGQRAINI AAFCKDFNAK  60
   61 TAEMKEGVPL PCRISVNSDR SYDLAIHHPP ATFFLKQAAG IQRGTMTPGK EVAGMITLKH 120
  121 LYEIAAIKIQ DPPNVLLTMQ QMCEMLISIA RTCGIKVVRE IDPAAYGEFL EERKLIVEQQ 180
  181 RRELQEKREA KMLRTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	2e34A
Description:	No description for 2e34A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits