| Protein: | sqd-PB |
| Organism: | Drosophila melanogaster |
| Length: | 344 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sqd-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
222.0 | [0..6] | [340..140] |
|
Region A: Residues: [1-218] |
1 11 21 31 41 51
| | | | | |
1 MAENKQVDTE INGEDFTKDV TADGPGSENG DAGAAGSTNG SSDNQSAASG QRDDDRKLFV 60
61 GGLSWETTEK ELRDHFGKYG EIESINVKTD PQTGRSRGFA FIVFTNTEAI DKVSAADEHI 120
121 INSKKVDPKK AKARHGKIFV GGLTTEISDE EIKTYFGQFG NIVEVEMPFD KQKSQRKGFC 180
181 FITFDSEQVV TDLLKTPKQK IAGKEVDVKR ATPKPENQ
|
| Detection Method: |  |
| Confidence: | 50.522879 |
| Match: | 1ha1A |
| Description: | HNRNP A1 (RBD1,2) FROM HOMO SAPIENS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [219-344] |
1 11 21 31 41 51
| | | | | |
1 MMGGMRGGPR GGMRGGRGGY GGRGGYNNQW DGQGSYGGYG GGYGGYGAGG YGDYYAGGYY 60
61 NGYDYGYDGY GYGGGFEGNG YGGGGGGNMG GGRGGPRGGG GPKGGGGFNG GKQRGGGGRQ 120
121 QRHQPY
|
| Detection Method: | |
| Confidence: | 1.7 |
| Match: | 1wckA |
| Description: | Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore. |
Matching Structure (courtesy of the PDB): |
|
