YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0310761, Tim...
Organism:	Drosophila melanogaster
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0310761, Tim....

Description	E-value	Query Range	Subject Range
Tim17a2-PA - The gene Tim17a2 is referred to in FlyBase by the symbol Dmel\Tim17a2 (CG14666, FBgn0037307). It is ...	240.0	[0..1]	[221..1]
TI17B_MOUSE - Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=1 SV=1	226.0	[0..2]	[172..3]
gi\|57111755 - gi\|57111755\|ref\|XP_538028.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	225.0	[0..2]	[172..3]
gi\|109130740 - gi\|109130740\|ref\|XP_001104863.1\| PREDICTED: similar to Mitochondrial import inner membrane transloca...	224.0	[0..2]	[172..53]
TIMM17B - translocase of inner mitochondrial membrane 17 homolog B (yeast) gi\|55662945 - gi\|55662945\|ref\|XP_521050.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	224.0	[0..2]	[172..3]
gi\|34933423, gi\|... - gi\|34933423\|ref\|XP_228758.2\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	223.0	[0..2]	[172..3]
gi\|76659462 - gi\|76659462\|ref\|XP_873411.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	220.0	[0..2]	[172..3]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYNRQPCPI RIVEDCGCAF MMGTIGGSLF EFLKGFRNAP TGLQRRLYGG IDLVKMRTPS  60
   61 IAGSFAVWGA TFSTVDCALV HYRQREDAWN SILSGAATGG ILAARNGIRA MANSALVGCL 120
  121 VLAMIEGAGA AVATIN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	46.69897
Match:	PF02466.10
Description:	No description for PF02466.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.604	N/A	N/A	a.60.10	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
View	Download	0.580	N/A	N/A	a.185.1	Gametocyte protein Pfg27
View	Download	0.546	N/A	N/A	a.1.1	Globin-like
View	Download	0.543	N/A	N/A	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.533	N/A	N/A	a.1.1	Globin-like

Predicted Domain #2

Region A:
Residues: [137-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AADKGAGIVI KPQRAQWEAI LETIDPKRAS STQDFALAEF ERVLDKCRAS REPNLLQDIP  60
   61 VKSHERDSKQ KPFYSLLDLV KLSQMF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.379	b.34.9	Tudor/PWWP/MBT
View	Download	0.331	a.158.1	F-box domain
View	Download	0.284	d.203.1	DsrC, the gamma subunit of dissimilatory sulfite reductase
View	Download	0.274	a.46.2	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View	Download	0.261	a.46.2	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits