YRC Public Data Repository - Protein Structure Prediction

Protein:	CG6971-PA
Organism:	Drosophila melanogaster
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG6971-PA.

Description	E-value	Query Range	Subject Range
gi\|194115943, gi... - gi\|195156936\|ref\|XP_002019352.1\| GL12363 [Drosophila persimilis], gi\|194115943\|gb\|EDW37986.1\| GL1236... gi\|54639387, gi\|... - gi\|54639387\|gb\|EAL28789.1\| GA19994 [Drosophila pseudoobscura pseudoobscura], gi\|125777533\|ref\|XP_001... gi\|54639387\|gb\|E... - GA19994-PA [Drosophila pseudoobscura], GA19994 [Drosophila pseudoobscura pseudoobscura]	368.0	[0..1]	[250..1]
gi\|37595560, gi\|... - gi\|56202936\|emb\|CAI20553.1\| dynein, axonemal, light intermediate chain 1 [Homo sapiens], gi\|37595560... gi\|114555595 - gi\|114555595\|ref\|XP_001169634.1\| PREDICTED: axonemal dynein light chain isoform 1 [Pan troglodytes]	363.0	[0..13]	[250..28]
gi\|109002119 - gi\|109002119\|ref\|XP_001111996.1\| PREDICTED: similar to axonemal dynein light chain [Macaca mulatta]	363.0	[0..13]	[250..28]
gi\|114555597 - gi\|114555597\|ref\|XP_513325.2\| PREDICTED: axonemal dynein light chain isoform 2 [Pan troglodytes]	355.0	[0..13]	[239..28]
gi\|76614515 - gi\|76614515\|ref\|XP_607493.2\| PREDICTED: similar to dynein, axonemal, light intermediate polypeptide ...	354.0	[0..13]	[250..6]
IDLC_RAT - Axonemal dynein light intermediate polypeptide 1 OS=Rattus norvegicus GN=Dnali1 PE=2 SV=1	353.0	[0..13]	[250..6]
IDLC_MACFA - Axonemal dynein light intermediate polypeptide 1 OS=Macaca fascicularis GN=DNALI1 PE=2 SV=1	353.0	[0..13]	[250..6]
gi\|31231225, gi\|... - ref\|XP_318486.1\| ENSANGP00000014372 [Anopheles gambiae], gi\|119115800\|ref\|XP_318486.3\| ENSANGP000000... AGAP004030-PA - dynein light intermediate chain, axonemal\|protein_coding\|2R:47972452:47973328:1\|gene:AGAP004030	352.0	[0..14]	[250..11]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEELDITSVG QFQTLVRYNN PVLVVKHPDK KGGAPLTEIE MKRPQTAGAL LDTKRETEEI  60
   61 LNSILPPRCW EEDGQLWQQS VSSTPATRQD VINLQEMLDT RLQQTQARET GICPVRRELY 120
  121 SQCFDEIIRQ VTINCSERGL LLLRIRDEIA MSMEAYETLY CSSVAFGMRK ALQAHEEKEM 180
  181 LRDRVKTLEL DKEALEEIIA DMKLKQEQAE RRNAELRASE EKKFTEEITF LKKTNAQLKA 240
  241 QLEGITAPKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.49
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits