YRC Public Data Repository - Protein Structure Prediction

Protein:	CG6629-PA
Organism:	Drosophila melanogaster
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG6629-PA.

Description	E-value	Query Range	Subject Range
gi\|118781278, gi... - gi\|118781278\|ref\|XP_311387.3\| AGAP010672-PA [Anopheles gambiae str. PEST], gi\|116130095\|gb\|EAA07051.... AGAP010672-PA - succinate dehydrogenase (ubiquinone) cytochrome b560 subunit\|protein_coding\|3L:8206322:8207034:1\|gen...	165.0	[0..30]	[202..3]
C560_CRIGR - Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Cricetulus griseus GN=SDHC PE=2 SV...	162.0	[0..52]	[202..20]
gi\|67517322 - gi\|67517322\|gb\|AAY68233.1\| cytochrome B-560 subunit of succinate dehydrogenase [Emericella nidulans] gi\|67903612, gi\|... - gi\|67903612\|ref\|XP_682062.1\| hypothetical protein AN8793.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	157.0	[0..13]	[202..6]
gi\|157120010, gi... - gi\|94468558\|gb\|ABF18128.1\| mitochondrial succinate dehydrogenase cytochrome b subunit [Aedes aegypti...	156.0	[0..29]	[202..1]
gi\|73535962, gi\|... - gi\|73535962\|pdb\|1ZP0\|C Chain C, Crystal Structure Of Mitochondrial Respiratory Complex Ii Bound With...	156.0	[0..66]	[202..3]
gi\|46444509, gi\|... - gi\|68466950\|ref\|XP_722390.1\| hypothetical protein CaO19.9055 [Candida albicans SC5314], gi\|68466667\|... orf19.1480, orf1... - orf19.1480 CGDID:CAL0004732 Assembly 19, Contig19-10119 (68521, 69051) CDS, translated using codon t... gi\|238881974 - gi\|238881974\|gb\|EEQ45612.1\| conserved hypothetical protein [Candida albicans WO-1]	156.0	[0..18]	[203..8]
gi\|467185, gi\|21... - gi\|467185\|gb\|AAA17343.1\| L308_F2_64 [Mycobacterium leprae], pir\|\|S73044 hypothetical protein L308_F2...	156.0	[0..20]	[210..60]
gi\|57111445 - gi\|57111445\|ref\|XP_536140.1\| PREDICTED: similar to succinate dehydrogenase complex, subunit C precur...	155.0	[0..53]	[202..21]
gi\|25520736 - pir\|\|F97676 succinate dehydrogenase membrane anchor chain (AF007569) [imported] - Agrobacterium tume... gi\|15889901, gi\|... - gi\|15889901\|ref\|NP_355582.1\| hypothetical protein AGR_C_4794 [Agrobacterium tumefaciens str. C58], g...	154.0	[0..68]	[204..27]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTCRSLARG LNICSPQLRH LLAQKPFNSA RLLATKAPKD HKASGPTTIG PSGDILVPPV  60
   61 TLKVIPFRMP PDLPYDDRNM LLGRQLSPHL SIYKIQLTST LSAFLRISGF VLAVFVWFVG 120
  121 ISGLCLQGDM EGFIKKVEKC DCHGMVTMAK VMVTMPFAYH TVAGTRHLIW YLNKFLTIPE 180
  181 IYATGYVAVA LTIALSAFLL AVKVGEKVKE EVVDLTKTKK GQKAKKEAPK DAKKDAPKDT 240
  241 KKEPKKDAKD KKKDEEGKSA K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.221849
Match:	1zoyC
Description:	Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits