YRC Public Data Repository - Protein Structure Prediction

Protein:	Rbp1-PD
Organism:	Drosophila melanogaster
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rbp1-PD.

Description	E-value	Query Range	Subject Range
PABP8_ARATH - Polyadenylate-binding protein 8 OS=Arabidopsis thaliana GN=PAB8 PE=1 SV=1	120.0	[0..6]	[144..322]
gi\|109493331, gi... - gi\|109494447\|ref\|XP_001066197.1\| PREDICTED: similar to nuclear cap binding protein subunit 2 isoform...	116.0	[0..2]	[116..93]
gi\|7673355 - gi\|7673355\|gb\|AAF66823.1\|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]	114.0	[0..6]	[143..304]
PABP_ASHGO - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii (strain ATCC 10895 / CBS 1... PABP_ASHGO - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1	112.0	[0..9]	[144..320]
gi\|172092 - gi\|172092\|gb\|AAA34838.1\| polyadenylate-binding protein	112.0	[0..9]	[143..320]
PABP_CANAL - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1 PABP_CANAL - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans (strain SC5314 / ATCC MYA... gi\|238879187 - gi\|238879187\|gb\|EEQ42825.1\| polyadenylate-binding protein [Candida albicans WO-1]	111.0	[0..9]	[144..334]
gi\|125602953, gi... - gi\|34015145\|gb\|AAQ56342.1\| putative poly(A)-binding protein [Oryza sativa (japonica cultivar-group)]... gi\|125561054 - gi\|125561054\|gb\|EAZ06502.1\| hypothetical protein OsI_28747 [Oryza sativa Indica Group]	111.0	[0..6]	[144..316]
gi\|92873940 - gi\|92873940\|gb\|ABE82276.1\| RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]	111.0	[0..1]	[144..306]

Back

Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRYREWDLA CKVYVGNLGS SASKHEIEGA FAKYGPLRNV WVARNPPGFA FVEFEDRRDA  60
   61 EDATRALDGT RCCGTRIRVE MSSGRSRDRR RGEGGSSGRS GSGRYRITPS ARTTSTATSS 120
  121 FYNINNLQQQ PSSQPQPATF NLQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2i2yA
Description:	No description for 2i2yA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits