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View Structure Prediction Details

Protein: gi|23170937, gi|...
Organism: Drosophila melanogaster
Length: 979 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23170937, gi|....

Description E-value Query
Range
Subject
Range
gi|10726443, gi|... - gi|24645747|ref|NP_731502.1| chromosome associated protein H2, isoform A [Drosophila melanogaster], ...
1629.0 [0..1] [979..1]

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Predicted Domain #1
Region A:
Residues: [1-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERILPEEAE AAYLSEAREQ ILEIAKNRPG TQVAKCIRAY DEQQDLASLV VLLEELSKNT  60
   61 DYSTDLRISL GYYIEELLRH CLGRNDVSRR SAIVAAGSAL QYCGKIYGDR VEYLCQVVEH 120
  121 QIEALLTSEL QKETPSGSAA PEKNERRPEE TRKRHPKKLT NKEVDPYLLT LEPKRFK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [178-417]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TMSDDKRFNA AGFVKCTRNR TIEYLYQDHT PPNLWKHAPI VDPHNPYDQD EKKQYKMFTY  60
   61 HVEHRYNTLL PDIPFERLNL IKEYVHTNQV NTTEILNEHM TTKEYLDEYI ALENQMLAAR 120
  121 YGAIVTRRRR LVDSARFMED NLDEGLAKKM CMDKNLPMDT NETVLIDQSL VDENSRSLTT 180
  181 AESTMGISQA ENSTLKSSEV EATLSVSHIE NSLSDSQEEN PPLSSTLAIN ESSVLDSTRV 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [418-692]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPIKDLTLDE LLLIDSGISM EELSDIQMHT AGQSFDDEGV VLSDLEDQRQ LSPMLQMVSP  60
   61 SMEAKTLNII EMDADLIMNV PREVSYPILL NVMGLPIKRL RRKCIFKLPP EFDLFRQARL 120
  121 PIKREGQQKS PTTPRTVLQI GREAPQNERE PGSPCSLEFD EDLSKLLCHT MSRRETILHI 180
  181 LPDFLGFRQR RPTFDSGFDI EEPRVSSCVS TIGEVKTELE DEIEANTNNL TDASASDALN 240
  241 ENVNDTKESG LGDSLAQELN ASTEPNAENN TANSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [693-895]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLEVTATESS GTLSGLETTV DLGMESALVS SVLDLSTEPS AMDSNIINVT QPDNSDLEIS  60
   61 TVQDQDTLHD EADANDLSAE TPNPIADSAV DDCSLIRDWH RRLAPALEAA HERQNFNIKD 120
  121 LGTEILDICK AGNRTATLAD VMADKDPSIM CRYMLASLVL TNHGNVSLDF ENRDKSKPID 180
  181 MSQFRMHLKS MKRMEINPED DVG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [896-979]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NINAAQSKST PRSKQLNDSA HKPRTSTTAS APTKRKSAEN SLSEVFAKTV RLIQPIPKMW  60
   61 PTPSDADSGI SSMGSSLAST ARLK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle