YRC Public Data Repository - Protein Structure Prediction

Protein:	CG6208-PA
Organism:	Drosophila melanogaster
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG6208-PA.

Description	E-value	Query Range	Subject Range
gi\|25534507 - pir\|\|AH2108 hypothetical protein all2423 [imported] - Nostoc sp. (strain PCC 7120) gi\|17229915, gi\|... - gi\|17229915\|ref\|NP_486463.1\| hypothetical protein all2423 [Nostoc sp. PCC 7120], gi\|17131515\|dbj\|BAB...	178.0	[0..2]	[275..332]
gi\|23126059, gi\|... - gi\|23126059\|ref\|ZP_00107968.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668682...	170.0	[0..4]	[272..1457]
gi\|115374809, gi... - gi\|115374809\|ref\|ZP_01462084.1\| tetratricopeptide repeat family [Stigmatella aurantiaca DW4/3-1], gi...	167.0	[0..2]	[275..198]
gi\|72397234, gi\|... - gi\|73670072\|ref\|YP_306087.1\| hypothetical protein Mbar_A2597 [Methanosarcina barkeri str. Fusaro], g...	166.0	[0..2]	[281..857]
gi\|71675440, gi\|... - gi\|71675440\|ref\|ZP_00673185.1\| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi\|716...	164.0	[0..2]	[255..1067]
gi\|116195872, gi... - gi\|88180447\|gb\|EAQ87915.1\| hypothetical protein CHGG_04534 [Chaetomium globosum CBS 148.51], gi\|1161...	163.0	[0..1]	[279..747]
gi\|49124322, gi\|... - gi\|67902940\|ref\|XP_681726.1\| hypothetical protein AN8457.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	162.0	[0..2]	[282..740]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLDAKKIE EAEALIGQTD SAANEYAKAG MYFKAATAYR IAKSFDKRKD CLLKAIDCYE  60
   61 NNKSWFHAAK SYEQIILLAK ETDKLSEVED YANRACCLYQ QHGSPEAAAA ALDKAAKMTE 120
  121 SKHPDLALGF YKRALAVVLI GDSTHQASEF ASKVSRILVR LKKYEEATKA LKKEISLNLQ 180
  181 TKSYGQVGRL VVALILVQLT LEDYVDAKKT FKKWGNRCDP QEVNTLQNLL KAFDDEDPEL 240
  241 ATKMLASPFI RHMDVEYALL SKDVPLPKGN RQMTKNAVDN AAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.39794
Match:	2ifuA
Description:	No description for 2ifuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits