YRC Public Data Repository - Protein Structure Prediction

Protein:	eloF-PA
Organism:	Drosophila melanogaster
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for eloF-PA.

Description	E-value	Query Range	Subject Range
gi\|76672739 - gi\|76672739\|ref\|XP_610522.2\| PREDICTED: similar to elongation of very long chain fatty acids (FEN1/E...	283.0	[0..8]	[254..458]
gi\|73973376 - gi\|73973376\|ref\|XP_852962.1\| PREDICTED: similar to homolog of yeast long chain polyunsaturated fatty...	277.0	[0..1]	[255..187]
gi\|50744984 - gi\|50744984\|ref\|XP_426204.1\| PREDICTED: similar to fatty acid elongase 1 [Gallus gallus]	277.0	[0..3]	[257..562]
gi\|125777395, gi... - gi\|54639341\|gb\|EAL28743.1\| GA16297-PA [Drosophila pseudoobscura], gi\|125777395\|ref\|XP_001359593.1\| G...	274.0	[0..10]	[257..26]
CG31522-PD, CG31... - This gene is referred to in FlyBase by the symbol Dmel\CG31522 (CG31522, FBgn0051522). It is a prote... gi\|220950634, gi... - gi\|220959342\|gb\|ACL92214.1\| CG31522-PB [synthetic construct], gi\|220950634\|gb\|ACL87860.1\| CG31522-PB...	270.0	[0..10]	[257..26]
gi\|108874329, gi... - gi\|157123636\|ref\|XP_001660239.1\| elongase, putative [Aedes aegypti], gi\|108874329\|gb\|EAT38554.1\| elo...	269.0	[0..10]	[257..27]
gi\|27924179 - gi\|27924179\|gb\|AAH44967.1\| LOC398440 protein [Xenopus laevis]	259.0	[0..8]	[257..66]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAPIDPVKI PVVSNPWITM GTLIGYLLFV LKLGPKIMEH RKPFHLNGVI RIYNIFQILY  60
   61 NGLILVLGVH FLFVLK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [77-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AYQISCIVSL PMDHKYKDRE RLICTLYLVN KFVDLVETIF FVLRKKDRQI SFLHVFHHFA  60
   61 MAFFGYLYYC FHGYGGVAFP QCLLNTAVHV IMYAYYYLSS ISKEVQRSLW WKKYITIAQL 120
  121 VQFAIILLHC TITLAQPNCA VNRPLTYGCG SLSAFFAVIF SQFYYHNYIK PGKKSAKQNK 180
  181 N

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits